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BioSample specifications

Information


Unique identifier OMICS_01024
Name BioSample
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline Ilene Karsch-Mizrachi

Publications for BioSample

BioSample citations

 (164)
library_books

Diversity and antimicrobial potential in sea anemone and holothurian microbiomes

2018
PLoS One
PMCID: 5942802
PMID: 29742123
DOI: 10.1371/journal.pone.0196178

[…] 2015). The FASTQ files generated after the metagenome sequencing were deposited in Sequence Read Archive database (SRA-NCBI; https://www.ncbi.nlm.nih.gov/sra), with the BioProject ID PRJNA420053 and BioSample accession numbers from SAMN08104840 to SAMN08104849. […]

library_books

Transcriptomic analysis of crustacean molting gland (Y organ) regulation via the mTOR signaling pathway

2018
Sci Rep
PMCID: 5943448
PMID: 29743490
DOI: 10.1038/s41598-018-25368-x

[…] ersion number: 0.32). The trimmed reads obtained from the ESA replicates were concatenated into two files containing forward (ESA_paired-FR.fa) and reverse (ESA_paired-RV.fa) sequences, separately. A BioSample data set (SRP132101) has been submitted to the NCBI sequence read archive: https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=announcement.The trimmed forward and reverse reads were then […]

library_books

Posttranslational modification of a histone like protein regulates phenotypic resistance to isoniazid in mycobacteria

2018
Sci Adv
PMCID: 5931751
PMID: 29732401
DOI: 10.1126/sciadv.aao1478

[…] ial chromosome (–). Consistent with this model, RNA-seq analysis of the hupB deletion mutant as compared to WT cells demonstrated that loss of hupB results in derepression of 77 genes ( and table S3; BioSample accession numbers SAMN06770114 and SAMN06770117). Gene set enrichment analysis (GSEA) demonstrated that the genes that are up-regulated in the hupB deletion mutant significantly overlap with […]

library_books

How single mutations affect viral escape from broad and narrow antibodies to H1 influenza hemagglutinin

2018
Nat Commun
PMCID: 5895760
PMID: 29643370
DOI: 10.1038/s41467-018-03665-3

[…] Deep sequencing data are available from the Sequence Read Archive under BioSample accession SAMN05789126 at https://www.ncbi.nlm.nih.gov/sra/?term = SAMN05789126. Computer code that analyzes these data to generate all the results described in this paper is in Supplementar […]

library_books

Draft genome of the Peruvian scallop Argopecten purpuratus

2018
GigaScience
PMCID: 5905365
PMID: 29617765
DOI: 10.1093/gigascience/giy031

[…] Supporting data are available in the GigaScience database []. Raw data have been deposited in NCBI with the project accession PRJNA418203. BioSample accessions: SAMN08022140 (genome); SAMN08731415 (transcriptome; muscle); SAMN08731411 (transcriptome; mantle); and SAMN08731410 (transcriptome; hepatopancreas). […]

call_split

Transcriptome and proteome profiling reveals stress induced expression signatures of imiquimod treated Tasmanian devil facial tumor disease (DFTD) cells

2018
Oncotarget
PMCID: 5882306
PMID: 29662615
DOI: 10.18632/oncotarget.24634
call_split See protocol

[…] , USA). 100 base-pair single-read mRNA sequencing was performed on the Illumina Hiseq-2000 platform (Illumina, San Diego, USA). The RNA-seq data have been deposited to the NCBI Sequence Read Archive (BioSample accessions SAMN07998608, SAMN07998609, SAMN07998610, SAMN07998611) with links to BioProject accession number PRJNA416378 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproj […]

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BioSample institution(s)
National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA

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