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BioStudies specifications


Unique identifier OMICS_23022
Name BioStudies
Restrictions to use None
Database management system MySQL
Community driven No
Data access Browse
User data submission Allowed
Maintained Yes


  • person_outline Ugis Sarkans

Publication for BioStudies

BioStudies citations


Comparative genomic analysis of the ‘pseudofungus’ Hyphochytrium catenoides

Open Biol
PMCID: 5795050
PMID: 29321239
DOI: 10.1098/rsob.170184

[…] fied in the Hyphochytrium genome, including an additional tRNA for selenocysteine. The ≥1 kbp scaffold assembly along with the predicted proteome has been submitted as a draft genome to the EMBL EBI (BioStudies: S-BSST46). Details comparing the assembly with other eukaryotic genome sequences are described in b. Analysis using RepeatMasker [] determined that the ≥1 kbp genome assembly comprised 9.5 […]


The 2018 Nucleic Acids Research database issue and the online molecular biology database collection

Nucleic Acids Res
PMCID: 5753253
PMID: 29316735
DOI: 10.1093/nar/gkx1235

[…] explicitly works at the intersection of RNA-seq transcriptomics and proteomics mass spectrometry. After covering such a variety of biological areas, it seems appropriate to finish with mention of the BioStudies database () that collates data of any and all kinds relating to a single study. […]


Software aided approach to investigate peptide structure and metabolic susceptibility of amide bonds in peptide drugs based on high resolution mass spectrometry

PLoS One
PMCID: 5665424
PMID: 29091918
DOI: 10.1371/journal.pone.0186461

[…] peptide specific mode integrated in Mass-MetaSite 5.1.5 Mass 3.2.3 software (Molecular Discovery Ltd, Middlesex, UK). Minimal dataset containing raw files for all the incubations is available on the BioStudies repository ( Submission number is S-BSST33. […]


Image data in need of a home

Mol Syst Biol
PMCID: 4704486
PMID: 26700853
DOI: 10.15252/msb.20156719

[…] in pioneering data transparency (Lemberger, ), Molecular Systems Biology has piloted the deposition of the high‐content imaging dataset from Breinig et al () to the two resources mentioned above: The BioStudies record S‐BSMS‐PGPC1 ( provides links to the raw data files, and the entry in the IDR database ( m […]


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BioStudies institution(s)
European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Wellcome Genome Campus, Hinxton, UK
BioStudies funding source(s)
Supported by European Molecular Biology Laboratory member states; European Commission [260791, 283775, 602156, 681002, 654039]; the Europe PMC funded by twenty-eight European-based funders of life science research under Wellcome Trust grants [098321] and [108758] awarded to EMBL-EBI.

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