BioVeL statistics

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Citations per year

Number of citations per year for the bioinformatics software tool BioVeL
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Tool usage distribution map

This map represents all the scientific publications referring to BioVeL per scientific context
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Associated diseases

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Popular tool citations

chevron_left Tree visualization Phylogenetic inference Reverse ecology analysis Bioinformatics workflows Workflow management systems Forward simulation Model selection chevron_right
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BioVeL specifications

Information


Unique identifier OMICS_23513
Name BioVeL
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Alex Hardisty
  • person_outline BioVeL Team

Publication for BioVeL

BioVeL citations

 (8)
library_books

Toward a Self Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa

2016
Syst Biol
PMCID: 5410925
PMID: 27616324
DOI: 10.1093/sysbio/syw066

[…] hylogenetic and biogeographical analyses. These include inferences of, for example, migration, diversification, and niche evolution, some of which are already integrated with SUPERSMART at http://www.biovel.eu. […]

library_books

Sample data processing in an additive and reproducible taxonomic workflow by using character data persistently linked to preserved individual specimens

2015
PMCID: 4589695
PMID: 26424081
DOI: 10.1093/database/bav094

[…] e interfaces to various biodiversity e-infrastructures have been implemented including the GBIF (Global Biodiversity Information Facility) Checklist Bank (), Biowikifarm (), Scratchpads (), Plazi (), BioVeL () and Biodiversity Heritage Library ().The EDIT Platform is open source and applicable to all groups of organism, in particular those covered by the ICN () and the International Code of Zoolog […]

library_books

PESI a taxonomic backbone for Europe

2015
Biodivers Data J
PMCID: 4609752
PMID: 26491393
DOI: 10.3897/BDJ.3.e5848

[…] ities involved in biodiversity sciences. Interfaces between the EDIT platform and Scratchpads (the primary technological platform for ViBRANT) were defined and implemented (see section 'Progression').BioVeL developed tools for pipelining data and analysis in Biodiversity Sciences into efficient workflows. One aspect of BioVeL is to expose EDIT platform services in a way that makes them efficiently […]

library_books

BioAcoustica: a free and open repository and analysis platform for bioacoustics

2015
PMCID: 4460420
PMID: 26055102
DOI: 10.1093/database/bav054

[…] re available in the Scratchpads repository.). The Drupal/Scratchpads code requires a webserver running Apache, PHP and MySQL. Analysis will only be possible if your webserver is allowed access to the BioVeL portal, controlled by the BioVeL project. […]

library_books

BOWS (bioinformatics open web services) to centralize bioinformatics tools in web services

2015
BMC Res Notes
PMCID: 4467627
PMID: 26032494
DOI: 10.1186/s13104-015-1190-0

[…] s such as Taverna [], Kepler [], or Galaxy [] and access to them can be made available by web services. Recently, workflow portals such as Biowep [] (Workflow Enactment Portal for Bioinformatics) and BioVeL [] (Biodiversity Virtual e-Laboratory) were organized providing browser-based interfaces and also web services interfaces for remote invocation. Moreover, a comprehensive workflow repository is […]

library_books

Enriched biodiversity data as a resource and service

2014
Biodivers Data J
PMCID: 4092319
PMID: 25057255
DOI: 10.3897/BDJ.2.e1125

[…] workflow embedded in a player and retrieving the results. The participants succeeded in this, resulting in a more integrated, powerful research environment that exposes remote HPC resources (such as BioVeL services) to iPython notebook users. The results are available for easy installation as the Pypi package tavernaPlayerClient.Code repository - https://github.com/myGrid/DataHackLeidenDemo - htt […]


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BioVeL institution(s)
School of Computer Science and Informatics, Cardiff University, Cardiff, UK; School of Computer Science, University of Manchester, Manchester, UK; [etc.]
BioVeL funding source(s)
Supported by funded by the European Union 7th Framework Programme, Grant no. 283359 (2011–2014) and by the Swedish LifeWatch project funded by the Swedish Research Council (Grant no. 829-2009-6278).

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