BioVenn protocols

BioVenn specifications

Information


Unique identifier OMICS_05567
Name BioVenn
Interface Web user interface
Restrictions to use None
Input data Some lists of identifiers.
Output data A Venn diagram.
Output format SVG,PNG
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Tim Hulsen <>
  • person_outline Jacob de Vlieg <>
  • person_outline Wynand Alkema <>

Publication for BioVenn

BioVenn IN pipelines

 (3)
2018
PMCID: 5885026
PMID: 29615509
DOI: 10.1128/mBio.02401-17

[…] average rpkm ratios of ≥1.5 were counted as changed in expression., heat maps were generated using gene e (https://software.broadinstitute.org/gene-e/index.html). venn diagrams were created using biovenn (41)., gsea software, available through the broad institute at http://www.broadinstitute.org/gsea/index.jsp, was the enrichment analysis software we used to determine whether defined sets […]

2018
PMCID: 5946011
PMID: 29780384
DOI: 10.3389/fimmu.2018.00912

[…] grant opp1133649 (pb). tp was funded by a ndm studentship. pb is a jenner institute investigator., 1http://www.cbs.dtu.dk/biotools/seq2logo/index.php (accessed: august 18, 2017)., 2http://www.biovenn.nl/ (accessed: august 16, 2017)., 3http://www.cbs.dtu.dk/services/gibbscluster/ (accessed: august 13, 2017)., 4http://www.iedb.org/ (accessed: august 13, 2017)., […]

2015
PMCID: 4617892
PMID: 26482235
DOI: 10.1186/s12864-015-2051-x

[…] p values adjusted for multiple testing with the benjamini-hochberg procedure, which controls false discovery rate (fdr, referred to as padj in deseq results). venn diagrams were generated using the biovenn program [43]. gene functions were assigned using public databases (ncbi [44], uniprot [45], kegg [46], biocyc database collection [47])., all rna-sequencing data have been deposited […]

BioVenn institution(s)
Computational Drug Discovery, CMBI, NCMLS, Radboud University Nijmegen Medical Centre, HB Nijmegen, Netherlands

BioVenn review

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Anonymous user #1085

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Web
Very useful tool!