BIOVIA Discovery Studio statistics

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Citations per year

Number of citations per year for the bioinformatics software tool BIOVIA Discovery Studio
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Tool usage distribution map

This map represents all the scientific publications referring to BIOVIA Discovery Studio per scientific context
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Associated diseases

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Popular tool citations

chevron_left Molecular simulation Structure homology search Amino acid sequence homology search Global PTM site prediction Protein-ligand docking Bioactivity prediction ADMET property prediction Tertiary structure prediction Chemical toxicity Binding affinity prediction Protein-protein docking Antibody modeling chevron_right
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Protocols

BIOVIA Discovery Studio specifications

Information


Unique identifier OMICS_33607
Name BIOVIA Discovery Studio
Software type Application/Script
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Unix/Linux, Mac OS, Windows
License Commercial
Computer skills Medium
Stability Stable
Registration required Yes
Maintained Yes

Versioning


No version available

BIOVIA Discovery Studio citations

 (31)
library_books

Novel Type III Polyketide Synthases Biosynthesize Methylated Polyketides in Mycobacterium marinum

2018
Sci Rep
PMCID: 5916927
PMID: 29695799
DOI: 10.1038/s41598-018-24980-1

[…] type III PKS amino acid sequences were downloaded from UniProt. The phylogenetic tree was constructed using maximum likelihood method in MEGA7.Homology modeling of type III PKSs was carried out using Biovia Discovery Studio version 4.5. FtpA, MMAR_2470, MMAR_2474 and SrsA proteins were modeled using a 4JAO_D template whereas DpgA model was generated using the 1TED_B template (Supplementary Table ) […]

library_books

New World feline APOBEC3 potently controls inter genus lentiviral transmission

2018
Retrovirology
PMCID: 5894237
PMID: 29636069
DOI: 10.1186/s12977-018-0414-5

[…] modeling per the Global Model Quality Estimations, QMEAN statistical parameters, and modeled sequence length. Each generated model was minimized and refined using Discovery Studio (Dassault Systèmes BIOVIA, Discovery Studio Modeling Environment, Release 4.1, San Diego: Dassault Systèmes, 2007). Mutant models and 3D images were generated with PyMOL (The PyMOL Molecular Graphics System, version 1.8 […]

call_split

Glucose regulated protein 78 substrate binding domain alters its conformation upon EGCG inhibitor binding to nucleotide binding domain: Molecular dynamics studies

2018
Sci Rep
PMCID: 5882873
PMID: 29615633
DOI: 10.1038/s41598-018-22905-6
call_split See protocol

[…] LINCS algorithm. Particle-mesh Ewald algorithm was used for long-range electrostatic interactions. 1.4 nm was set as the cutoffs for short-range electrostatic and van der Waals interaction.PyMol and BIOVIA Discovery Studio, XMGRACE plotting tool and GROMACS analysis tools were used for the visualization and analyses of trajectories. […]

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Synthesis, characterization, computational studies and biological activity evaluation of Cu, Fe, Co and Zn complexes with 2 butanone thiosemicarbazone and 1,10 phenanthroline ligands as anticancer and antibacterial agents

2018
PMCID: 5938540
PMID: 29743867
DOI: 10.17179/excli2017-984
call_split See protocol

[…] es of receptors topoisomerase II (Topo II) (PDB i.d. 4GFH) and ribonucleoside diphosphate reductase (RR) (PDB i.d. 5CNT) were downloaded from protein data bank (http://www.rcsb.org/pdb/home/home.do); Biovia Discovery Studio visualizer version 16.1.0 and Lig Plus plot version 1.4.5 were used to visualize docking poses. All the chemical structures were drawn in Chem Draw Professionals version 15.1. […]

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Use of quercetin in animal feed: effects on the P gp expression and pharmacokinetics of orally administrated enrofloxacin in chicken

2018
Sci Rep
PMCID: 5849680
PMID: 29535328
DOI: 10.1038/s41598-018-22354-1
call_split See protocol

[…] ligands that was removed from the structure prior to docking. Exhaustiveness was set to 20, and the top nine favorable binding modes were calculated for each molecule. All images were generated using Biovia Discovery Studio 2016. […]

library_books

Rational Design, Synthesis and Evaluation of γ CD Containing Cross Linked Polyvinyl Alcohol Hydrogel as a Prednisone Delivery Platform

2018
PMCID: 5874843
PMID: 29518980
DOI: 10.3390/pharmaceutics10010030

[…] uplot software version 5.0 [] was used to plot the results of SASA, RGYR and capture calculations. Finally, the intermolecular interactions that occur between γ-CDHSAs and PDN were analyzed using the BIOVIA-Discovery Studio Visualizer (BIOVIA-DS Visualizer) version 4.5. (for Linux) Accelrys Software Inc., San Diego, CA, USA []. […]


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BIOVIA Discovery Studio institution(s)
BIOVIA, San Diego, CA, USA

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