By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.

A system for MicroRNA-MRNA integrated analysis using high throughput sequencing data by utilizing cloud computing environment.

Specifications

Software type:: Framework
Interface:: Command line interface
Restrictions to use:: None
Operating system:: Unix/Linux
Parallelization:: MapReduce
Computer skills:: Advanced
Stability:: Stable

View all reviews

0 user review

Write a review about this tool

Sign up for free to join and share with our community.
Already have an account? Sign in to review this tool.

No review has been posted.

View all issues

0 issue

Open an issue about this tool

Sign up for free to join and share with our community.
Already have an account? Sign in to open an issue.

No open issue.

Publications

(Chae et al., 2014) BioVLAB-MMIA-NGS: MicroRNA-mRNA Integrated Analysis using High Throughput Sequencing Data. Bioinformatics.
PMID: 25270639

Classification

Literature

(Li et al., 2012) Performance comparison and evaluation of software tools for microRNA deep-sequencing data analysis. Nucleic acids research.
PMID: 22287634
(Liu et al., 2014) Identifying miRNAs, targets and functions. Briefings in bioinformatics.
PMID: 23175680

Specifications

0 user review

Write a review about this tool

0 issue

Open an issue about this tool

Publications

Classification

Literature

38 related tools

bcbio-next…

Chimira

Chipster

Comprehens…

Comprehens…

Computatio…

DARIO

DSAP

E-miR

Fragment L…

iMir

integrated…

Integrativ…

isomiRex

MAGI

miRanalyze…

miRDeepFin…

miRdentify

miRGator

miRge

miRNAKey

MIRPIPE

mirPRo

mirTools

ncPRO-seq

Oasis

oneChannel…

PIPmiR

QuickNGS

SeqBuster

shortran

SMiRK

sRNAtoolbo…

Strand NGS

Transparen…

tsRFinder

UEA sRNA t…

wapRNA