Biowep statistics

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Associated diseases

Associated diseases

Biowep specifications


Unique identifier OMICS_25136
Name Biowep
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Maintained Yes


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  • person_outline Ezio Bartocci <>
  • person_outline Guglielmo Bertolini <>
  • person_outline Flavio De Paoli <>

Publication for Biowep

Biowep in publications

PMCID: 4467627
PMID: 26032494
DOI: 10.1186/s13104-015-1190-0

[…] methods can be incorporated together with workflow engines such as taverna [], kepler [], or galaxy [] and access to them can be made available by web services. recently, workflow portals such as biowep [] (workflow enactment portal for bioinformatics) and biovel [] (biodiversity virtual e-laboratory) were organized providing browser-based interfaces and also web services interfaces […]

PMCID: 3180464
PMID: 21899774
DOI: 10.1186/1756-0500-4-331

[…] to satisfy the four aspects mentioned above. therefore, full-featured scientific workflow systems including biopipe [], pegasus [], ptolemy ii [], taverna [], pegasys [], kepler [], triana [], biowep [], swift [], biowms [], cyrille2 [], knime [], ergatis [], and galaxy [] have been applied in the bioinformatics domain. their features, however, have some disadvantages for actual practices […]

PMCID: 3051902
PMID: 21352538
DOI: 10.1186/1471-2105-12-61

[…] frameworks for creating abstracted workflows suitable for enactment in grid environments (e.g., pegasus[]), high-level "enactment portals" that require less programming effort by users (e.g., biowep[]), or flower-level software libraries (e.g., the perl-based biopipe[]). indeed, the recent proliferation of wms technologies and implementations led deelman et al. [] to systematically study […]

PMCID: 2259424
PMID: 18315855
DOI: 10.1186/1471-2105-9-S1-S23

[…] languages, such as perl, python, java, and unix-scripts. recent examples of such systems in bioinformatics include biopipe [], biowbi [], taverna [], wildfire[], kde biosciences [], grna [], biowep [], and biowms []. each deployment is therefore subject to its own code development and testing. although programming languages offer sophisticated control over the intended procedure, […]

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Biowep institution(s)
Bioinformatics and Structural Proteomics, National Cancer Research Institute (IST), Genova, Italy; Department of Mathematics and Computer Science (DMI), University of Camerino, Camerino (MC), Italy; Department of Informatics, Systems and Communication (DISCo), University of Milan "Bicocca", Milano, Italy; Biomedical Technologies Institute (ITB), National Research Council, Milano, Italy and 5CILEA, Segrate (MI), Italy
Biowep funding source(s)
Supported by the Italian Ministry of Education, University and Research (MIUR), projects "Oncology over Internet – O2I" and "Laboratory of Interdisciplinary Technologies in Bioinformatics – LITBIO".

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