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BioXpress specifications

Information


Unique identifier OMICS_07890
Name BioXpress
Restrictions to use None
Version 1.0
Maintained No

Taxon


  • Primates
    • Homo sapiens

Maintainer


This tool is not available anymore.

Publication for BioXpress

BioXpress citations

 (5)
call_split

Global Quantitative Proteomics reveal Deregulation of Cytoskeletal and Apoptotic Signalling Proteins in Oral Tongue Squamous Cell Carcinoma

2018
Sci Rep
PMCID: 5785498
PMID: 29371635
DOI: 10.1038/s41598-018-19937-3
call_split See protocol

[…] Expression data were retrieved from BioXpress database for target genes identified in the present study. The expression data was subjected to correlation analysis against Average Fold-Ratio obtained from 2D-DIGE gels spot intensity as d […]

library_books

BioMuta and BioXpress: mutation and expression knowledgebases for cancer biomarker discovery

2017
Nucleic Acids Res
PMCID: 5753215
DOI: 10.1093/nar/gkx907

[…] nts, the workflow of manual curation requiring agreement by two independent curators creates an inherent tradeoff between quality and database growth rate potential (). Our databases, BioMuta (,) and BioXpress (), differ from previous attempts at cataloging disease-associated mutation and expression primarily through the aggregation of data across many studies into a single source with a unified r […]

library_books

iASPP induces EMT and cisplatin resistance in human cervical cancer through miR 20a FBXL5/BTG3 signaling

2017
PMCID: 5387376
PMID: 28399926
DOI: 10.1186/s13046-017-0520-6

[…] , BTG3 and E-cadherin along with higher Vimentin level was detected in CC samples compared with the paired normal cervical tissues. Then we performed a pan-cancer bioinformatics analysis based on the BioXpress database [], to analyze the mRNA expression of FBXL5 and BTG3 in cancer tissues and their paired normal tissues across multiple cancer types. Interestingly, iASPP is up-regulated in 100% of […]

library_books

Impact of germline and somatic missense variations on drug binding sites

2016
Pharmacogenomics J
PMCID: 5380835
PMID: 26810135
DOI: 10.1038/tpj.2015.97

[…] anded protein–drug binding region was calculated. In addition, as the gene expression level is another factor that may influence drug efficacy, cancer-related gene expression data were retrieved from BioXpress. It analyzes and normalizes raw count data of paired sample (tumor and normal) from TCGA using DEseq R package (http://bioconductor.org/packages/release/bioc/html/DESeq.html), a method that […]

library_books

The Disease Ontology: fostering interoperability between biological and clinical human disease related data

2015
Mamm Genome
PMCID: 4602048
PMID: 26093607
DOI: 10.1007/s00335-015-9576-9

[…] in their Clinical Genome Informatics System workflow to collect clinical disease data and to translate pathology reports to Next Generation Sequencing Clinical Reports (Ananda et al. ). Likewise, the BioXpress, a gene expression and cancer association database, is utilizing DO to map cancer terms across cancer resources to facilitate uniform pan-cancer analysis (Wan et al. ). […]

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BioXpress institution(s)
Department of Biochemistry and Molecular Medicine, The George Washington University, WA, DC, USA

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