BioXRT statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

BioXRT specifications

Information


Unique identifier OMICS_03845
Name BioXRT
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages Perl
Computer skills Medium
Stability Stable
Maintained Yes

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BioXRT in publications

 (6)
PMCID: 4559162
PMID: 26334530
DOI: 10.1186/s12881-015-0225-7

[…] through the agilent scanner and the feature extraction software (v10.7.3.1) and agilent genomic workbench 7.0.4. bioinformatic analysis was carried out by consulting the database of genomic variants bioxrt [http://projects.tcag.ca/variation/]. gene content analysis in the deleted segment was carried out by using ucsc database ncbi37/hg19 (http://www.genome.ucsc.edu)., next generation sequencing […]

PMCID: 3892072
PMID: 24393457
DOI: 10.1186/1756-8935-7-1

[…] number variations, detected by array-cgh, were potentially correlated with the clinical phenotype of our patient, bioinformatic analysis was carried out, consulting the database of genomic variants bioxrt (http://projects.tcag.ca/variation/)., dna was extracted from peripheral blood of the patient and her relatives with a high pure pcr template preparation kit (roche, mannheim, germany), […]

PMCID: 3855842
PMID: 24324765
DOI: 10.1371/journal.pone.0082210

[…] length of alignment reported in blast results by each of the top scoring species., recently, triplet et al. [] thoroughly compared and benchmarked four data warehousing systems namely biomart [], bioxrt (mentioned in []), intermine [] and pathway tools [] in a number of aspects covering accuracy, their computational requirements and development efforts. in that study, intermine and pathway […]

PMCID: 3808344
PMID: 24205241
DOI: 10.1371/journal.pone.0078481

[…] detected by array-cgh were polymorphic or potentially correlated with the clinical phenotype of the patients, bioinformatic analysis was carried out consulting the database of genomic variants bioxrt [http://projects.tcag.ca/variation/]. investigation of gene contents in the deleted segment was carried out by using ucsc database ncbi36/hg18 (http://www.genome.ucsc.edu)., total rna […]

PMCID: 3599180
PMID: 23398904
DOI: 10.1186/1755-8794-6-3

[…] if the copy number variations (cnvs) detected were polymorphic or potentially correlated with the disease, bioinformatics analysis was carried out consulting the database of genomic variants bioxrt []., g-banding analysis of the proband’s peripheral lymphocytes was performed at 450-bands resolution. a total of 50 cells were fully analyzed showing the following finding: […]


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