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Biozon specifications


Unique identifier OMICS_02680
Name Biozon
Restrictions to use None
Maintained No

Publication for Biozon

Biozon citations


JBioWH: an open source Java framework for bioinformatics data integration

PMCID: 3708619
PMID: 23846595
DOI: 10.1093/database/bat051

[…] . DiscoveryLink (), BioMediator (), BioMoby () are good examples of this approach. Finally, warehouse databases integrate data sources in one place: examples of this approach include BioWarehouse (), Biozon (), Atlas (), EnsMart () and IGD (). This approach provides fast querying over joined data sets, but also requires continuous updating.Conceptual integration of data is a common issue in all da […]


BioNetwork Bench: Database and Software for Storage, Query, and Analysis of Gene and Protein Networks

Bioinform Biol Insights
PMCID: 3498971
DOI: 10.4137/BBI.S9728

[…] easily store and reuse query results. Furthermore, constructing complex queries requires a grasp of database querying language at a level that is often beyond the expertise of a bench biologist. The Biozon database contains sequence, structure, and interaction data and supports querying and fuzzy searches using sequence, expression, or structural similarity., However, it does not offer support fo […]


Comparative Microbial Modules Resource: Generation and Visualization of Multi species Biclusters

PLoS Comput Biol
PMCID: 3228777
PMID: 22144874
DOI: 10.1371/journal.pcbi.1002228

[…] ad access to large-scale datasets from multiple species , , , , , .A number of tools are being developed for interpreting and exploring large-scale biological networks, such as: PathSys , NAViGaTOR , BIOZON , , BN++ , ONDEX , Cytoscape, and Osprey . For a review of visualization tools for systems biology see . Most tools focus on automated methods for integrating interaction datasets and displayin […]


A journey to Semantic Web query federation in the life sciences

BMC Bioinformatics
PMCID: 2755818
PMID: 19796394
DOI: 10.1186/1471-2105-10-S10-S10

[…] To address this problem, approaches have been developed to facilitate data integration on a larger scale. Some representative approaches include EBI SRS [], Atlas [], DiscoveryLink [], Biokleisli [], Biozon [], etc. In general, these approaches fall into two categories: data warehouse and federated database. The data warehouse approach relies on data translation in which data from different databa […]


GMODWeb: a web framework for the generic model organism database

Genome Biol
PMCID: 2481422
PMID: 18570664
DOI: 10.1186/gb-2008-9-6-r102

[…] t provide a middleware layer that queries across distributed sources, such as BioMoby [], or those that aggregate data from a variety of sources in a common system, such as Atlas [], BioWarehouse [], BIOZON [], FlyMine [], or EnsMart [].In many ways GMODWeb was designed as a bridge between these different types of MOD tools by providing a generic framework for both browsing and searching model org […]


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Biozon institution(s)
Cornell University, Ithaca, NY, USA

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