Birdsuite protocols

Birdsuite specifications

Information


Unique identifier OMICS_00705
Name Birdsuite
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Affymetrix
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Birdsuite <>

Publication for Birdsuite

Birdsuite IN pipelines

 (2)
2014
PMCID: 4029584
PMID: 24849202
DOI: 10.1371/journal.pone.0096841

[…] comparison. detailed observations are provided table s3 in file s4 and figure s1–s6 in file s4 to support our suggestion., some methods require multiple steps to derive the copy number variation. birdsuite [18] is a four-stage algorithm to integrate copy numbers and genotype calling on cnv regions. the third step of birdsuite is also based on hmm to infer copy numbers on cnv regions […]

2014
PMCID: 4029584
PMID: 24849202
DOI: 10.1371/journal.pone.0096841

[…] some methods require multiple steps to derive the copy number variation. birdsuite [18] is a four-stage algorithm to integrate copy numbers and genotype calling on cnv regions. the third step of birdsuite is also based on hmm to infer copy numbers on cnv regions with the results of the first two steps. its final step combines all information obtained from the preceding steps to estimate […]

Birdsuite institution(s)
Broad Institute of Harvard and Massachusetts Institute of Technology, Cambridge, MA, USA

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