BiRen specifications

Information


Unique identifier OMICS_16298
Name BiRen
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements
Torch, npy4th, Numpy, Pandas, Scipy, SciKit-learn, Theano, Lasagne, bedtools, bigWigAverageOverBed
Maintained Yes

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Maintainer


  • person_outline Wenjie Shu <>

Publication for BiRen

BiRen in publications

 (5)
PMCID: 5624168
PMID: 29075290
DOI: 10.1155/2017/7182429

[…] of this work was presented as abstract in the apsa 46th annual meeting in 2015., there are no competing interests to declare., eric a. sparks, jeremy g. fisher, faraz a. khan, leonel rodriguez, and biren p. modi designed the research study. cristine s. velazco, eric a. sparks, leonel rodriguez, and biren p. modi performed the research. brenna s. fullerton, eric a. sparks, cristine s. velazco, […]

PMCID: 4990875
PMID: 27538536
DOI: 10.1186/s13054-016-1433-z

[…] the 5 sleep quality items on each rcsq assessment. higher scores represent better overall sleep quality, cas measured using the confusion assessment method for the icu (cam-icu) for delirium, biren b. kamdar and michael p. combs are co-first authors., none., dr. kamdar is currently supported by a career development award from the university of california, los angeles (ucla) clinical […]

PMCID: 4510966
PMID: 26171589
DOI: 10.1038/ncomms8717

[…] national museum of natural history; judy chupasko, museum of comparative zoology; and randy susman, stony brook university. we are also grateful to liam revell for technical advice, to david alba, biren patel and steve frost for helping compiling the data and to matt tocheri, caley orr and biren patel for feedback in previous versions of this work. this research was supported by the national […]

PMCID: 3604876
PMID: 23526335
DOI: 10.2147/CLEP.S43118

[…] this work is supported by a fellowship grant of the canadian institute of health research to dr farrah mateen and a ruth l. kirschstein nrsa award from the national institutes of health to dr biren kamdar (grant # f32 hl104901)., disclosure , the authors report no conflicts of interest in this work., “nurses”[mesh terms] or “employment”[mesh terms] or airline* crew*[tw] or cabin*[tw] […]

PMCID: 3783684
PMID: 24082511
DOI: 10.4103/0971-6580.117261

[…] dose. however, these results need to be further confirmed by detailed studies including histopathological analysis., we are grateful to our all toxicology team members including shekhar kadam and biren thakkar for their support and scientific advice throughout the experiments. we also thank sweta patel and tushar patel for clinical pathology analysis. the study was supported by zydus research […]


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BiRen funding source(s)
This work was supported by grants from the Major Research Plan of the National Natural Science Foundation of China (No. U1435222), the Program of International S&T Cooperation (No. 2014DFB30020) and the National High Technology Research and Development Program of China (No. 2015AA020108).

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