bistaRNA specifications


Unique identifier OMICS_09347
Name bistaRNA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes


No version available

Publication for bistaRNA

bistaRNA citation


A comprehensive benchmark of RNA–RNA interaction prediction tools for all domains of life

PMCID: 5408919
PMID: 27993777
DOI: 10.1093/bioinformatics/btw728

[…] ding regions to report the final MFE of the RNA duplex, which is considered more realistic biophysically (). AccessFold includes accessibility using a method defined as pseudo-energy minimization (). BistaRNA also includes accessibility and can predict multiple binding sites (). Lastly, tools like TargetRNA2 (), CopraRNA (), miRanda (), TargetScan (), PETcofold () and DIANA-microT () exploit homol […]

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