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Bisulfite Sequence Mapping Program BSMAP

A short reads mapping software tool for bisulfite sequencing reads. BSMAP combines genome hashing and bitwise masking to achieve fast and accurate bisulfite mapping. Compared with existing bisulfite mapping approaches, BSMAP is faster, more sensitive and more flexible.

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BSMAP forum

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BSMAP classification

BSMAP specifications

Software type:
Package/Module
Restrictions to use:
None
Output format:
SAM/BAM, BSP, text
Programming languages:
C++
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Input format:
FASTQ, BAM
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Stable

BSMAP distribution

versioning

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No versioning.

BSMAP support

Documentation

Maintainer

  • Wei Li <>

Credits

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Publications

Institution(s)

Division of Biostatistics, Dan L Duncan Cancer Center, Department of Molecular and Cellular Biology, Baylor College of Medicine, One Baylor Plaza, Houston, TX, USA

Link to literature

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