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BRAT | Bisulfite-treated reads analysis tool

An accurate and efficient tool for mapping short reads obtained from the Illumina Genome Analyzer following sodium bisulfite conversion. BRAT supports single and paired-end reads and handles input files containing reads and mates of different lengths. BRAT is faster, maps more unique paired-end reads and has higher accuracy than existing programs. The software package includes tools to end-trim low-quality bases of the reads and to report nucleotide counts for mapped reads on the reference genome.

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BRAT forum

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BRAT classification

BRAT specifications

Unique identifier:
OMICS_00577
Software type:
Package/Module
Restrictions to use:
None
Output format:
Tab-delimited text (convertible to SAM)
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Stable
Name:
Bisulfite-treated Reads Analysis Tool
Interface:
Command line interface
Input format:
FASTQ
Biological technology:
Illumina
Programming languages:
C++
Computer skills:
Advanced
Maintained:
Yes

BRAT distribution

versioning

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No versioning.

BRAT support

Maintainer

  • Elena Harris <>

Credits

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Publications

Institution(s)

Department of Computer Science; Department of Cell Biology and Neuroscience; Institute for Integrative Genome Biology, University of California, Riverside, USA

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