BKM-react specifications


Unique identifier OMICS_06225
Name BKM-react
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes


  • person_outline Dietmar Schomburg
  • person_outline Lisa Jeske

Publication for BKM-react

BKM-react citations


A review of computational tools for design and reconstruction of metabolic pathways

PMCID: 5851934
PMID: 29552648
DOI: 10.1016/j.synbio.2017.11.002

[…] ued discovery of new reactions and metabolites . In a recent effort, MetaNetX employed a reconciliation algorithm MNXref to resolve the discrepancies in reaction and metabolite naming between GSMs. BKM-react matched metabolites and reactions by comparing InChI structures and compound synonyms . RxnFinder used PubChem database to unify compound synonyms and added more than 50,000 reactions curate […]


From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] n System; ANOVA: analysis of variance; apLCMS: Adaptive Processing of High-Resolution LC-MS data; ARALIP: Arabidopsis acyl-lipid metabolism; ASCII: American Standard Code for Information Interchange; BKM-react: BRENDA-KEGG-MetaCyc reactions; BNICE: Biochemical Network Integrated Computational Explorer; CAMERA: Collection of Algorithms for Metabolite Profile Annotation; CDF: common data format; CFM […]

BKM-react institution(s)
Department of Bioinformatics and Biochemistry, Institute for Biochemistry and Biotechnology, Technische Universität Braunschweig,Braunschweig, Germany
BKM-react funding source(s)
Supported by European Union (FELICS, SLING).

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