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BlackOPs | Increasing confidence in variant detection through mappability filtering

This page contains the necessary software to characterize mappability of RNA-Seq reads and create a "blacklist" of genomic positions of mismapped reads.

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BlackOPs classification

BlackOPs specifications

Unique identifier:
OMICS_01229
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
Yes

BlackOPs distribution

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BlackOPs support

Maintainer

  • D. Neil Hayes <>

Credits

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Publications

Institution(s)

Department of Statistics and Operations Research, University of North Carolina, Chapel Hill, NC, USA; The Genome Institute at Washington University, St Louis, MO, USA; Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC, USA; Department of Genetics, University of North Carolina, Chapel Hill, NC, USA; Department of Computer Science, University of Kentucky, Lexington, KY, USA; Department of Computer Science, University of North Carolina, Chapel Hill, NC, USA; Division of Medical Oncology, Department of Internal Medicine, University of North Carolina, Chapel Hill, NC, USA

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