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BlackOPs specifications

Information


Unique identifier OMICS_01229
Name BlackOPs
Alternative name Blacklist Of Positions
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0.6
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline D. Neil Hayes <>

Publication for Blacklist Of Positions

BlackOPs citation

library_books

Altered RNA editing in 3′ UTR perturbs microRNA mediated regulation of oncogenes and tumor suppressors

2016
PMCID: 4793219
PMID: 26980570
DOI: 10.1038/srep23226

[…] alignment artifacts on chr21 of the gm12878 dataset. our method achieved a significantly higher true positive rate (84.6%) than the gatk realigned output (56.1%) (). we also compared our method with blackops to remove multiple alignments artifacts. our method removed all four known multiple alignment artifacts, while blackops can remove three out of the four known cases; 2) no reliance on genome […]


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BlackOPs institution(s)
Department of Statistics and Operations Research, University of North Carolina, Chapel Hill, NC, USA; The Genome Institute at Washington University, St Louis, MO, USA; Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC, USA; Department of Genetics, University of North Carolina, Chapel Hill, NC, USA; Department of Computer Science, University of Kentucky, Lexington, KY, USA; Department of Computer Science, University of North Carolina, Chapel Hill, NC, USA; Division of Medical Oncology, Department of Internal Medicine, University of North Carolina, Chapel Hill, NC, USA
BlackOPs funding source(s)
Supported by National Institutes of Health (U24 CA143848, U24 CA143848-02S1, F32 CA142039).

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