BLASR pipeline

BLASR specifications

Information


Unique identifier OMICS_05134
Name BLASR
Alternative name Basic Local Alignment with Successive Refinement
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTA/FASTQ
Biological technology Pacific Biosciences, Oxford Nanopore
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Publication for Basic Local Alignment with Successive Refinement

BLASR IN pipeline

2018
PMCID: 5864009
PMID: 29566006
DOI: 10.1371/journal.pone.0194366

[…] (table 2). in both experiments, reads had a length spanning from 226 bp to 20,498 bp with a mean of ~5,600 kb that includes sequences of hbv and vector. available aligners last v475 [15], blasr [19] and lastz v 1.02.00 [20] were tested to align nanopore reads to their respective sanger sequence references including hbv and vector sequences. last was the read aligner generating […]

BLASR institution(s)
Department of Mathematics, University of California, San Diego, CA, La Jolla, USA

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