BBAP specifications
- Unique identifier:
- OMICS_17965
- Software type:
- Package/Module
- Restrictions to use:
- None
- Computer skills:
- Advanced
- Stability:
- Stable
- Name:
- BLAST-based assembly pipeline
- Interface:
- Command line interface
- Operating system:
- Unix/Linux
- Version:
- 1.0
- Maintained:
- Yes
versioning
No versioning.
BBAP distribution
download
BBAP support
Documentation
- Documentation: http://homepage.ntu.edu.tw/~youylin/BBAP_Manual.pdf
Maintainer
- Hurng-Yi Wang <>
forum
No open topic.
Credits
Publications
-
(Lin et al., 2017)
De novo assembly of highly polymorphic metagenomic data using in situ generated reference sequences and a novel BLAST-based assembly pipeline.
BMC Bioinformatics.
DOI: 10.1186/s12859-017-1630-z
Institution(s)
Department of Life Science, National Taiwan University, Taipei, Taiwan; Department of Forestry and Nature Conservation, Chinese Culture University, Taipei, Taiwan; Laboratory of Disease Genomics and Individualized Medicine, Beijing Institute of Genomics, the Chinese Academy of Sciences, Beijing, China; Graduate Institute of Clinical Medicine, National Taiwan University, Taipei, Taiwan; Genomics Research Center, Academia Sinica, Taipei, Taiwan; Institute of Ecology and Evolutionary Biology, National Taiwan University, Taipei, Taiwan; Research Center for Developmental Biology and Regenerative Medicine, National Taiwan University, Taipei, Taiwan
Funding source(s)
This work was supported by the Ministry of Science and Technology [103-2621-B-002 -003 and 104-2621-B-002 -006] and National Taiwan University [101R7836, 102R7836, and 103R7836].
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