BROCC specifications

Unique identifier:
OMICS_14733
Software type:
Package/Module
Restrictions to use:
None
Output data:
Outputs a QIIME-formated taxonomy map and a log file
Programming languages:
Python
Computer skills:
Advanced
Maintained:
Yes
Name:
BLAST Read and Operational Taxonomic Unit Consensus Classifier
Interface:
Command line interface
Input data:
BLAST results
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Stability:
Stable

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BROCC distribution

download

BROCC support

Documentation

Maintainer

  • Frederic Bushman <>

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Credits

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Publications

Institution(s)

Department of Microbiology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA; Institute for Immunology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA; Department of Pathobiology, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA; Department of Pathology and Laboratory Medicine, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA; Department of Pathology, University of Michigan, Ann Arbor, MI, USA; Division of Gastroenterology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA; Center for Clinical Epidemiology and Biostatistics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA

Funding source(s)

This work was supported by Project UH2DK083981, the Penn Genome Frontiers Institute; NIH AI087990, AI083480, U01AI095608; NIH AI39368; T32-AI060516; Penn Digestive Disease Center (P30 DK050306); The Joint Penn-CHOP Center for Digestive, Liver, and Pancreatic Medicine; S10RR024525; UL1RR024134, K24-DK078228; and the Howard Hughes Medical Institute.

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