BLASTatlas pipeline

BLASTatlas specifications

Information


Unique identifier OMICS_13422
Name BLASTatlas
Interface Application programming interface
Restrictions to use None
Input data A file containing the genome sequence, including all annotated coding sequences (comprising protein-start, -stop and -direction) for the reference genome.
Programming languages Perl
Computer skills Advanced
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for BLASTatlas

BLASTatlas IN pipelines

 (2)
2015
PMCID: 4535895
PMID: 26484173
DOI: 10.1016/j.gdata.2015.01.006

[…] p. chlororaphis may share a more recent common ancestor with p. fluorescens than with p. syringae., conserved and specific regions in the genome can be identified through global alignments. blastatlas gives an overview of the whole genome homology, and the reference genome can be compared at the gene and/or protein level against many genomes [18]. in this study, the reference genome […]

2009
PMCID: 2777879
PMID: 19860885
DOI: 10.1186/1471-2148-9-258

[…] in bold. +vibrio angustum and vibrio fischeri were reclassified as photobacterium angustum [67] and aliivibrio fischeri [35], respectively. *calculated using concatenated chromosome sequences., the blastatlas plots were constructed as described previously [40,41]. the pangenome plot, and proteome matrix were constructed as described [42]. for building the atlas, the genomes were automatically […]

BLASTatlas institution(s)
Center for Biological Sequence Analysis, Department of Systems Biology, The Technical University of Denmark, Lyngby, Denmark
BLASTatlas funding source(s)
The work was supported by a grant from the European Union through the EMBRACE network of Excellence, contract number LSHG-CT-2004-512092 and a grant from the Danish Center for Scientific Computing.

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