BLASTN statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool BLASTN
info

Tool usage distribution map

This map represents all the scientific publications referring to BLASTN per scientific context
info info

Associated diseases

This word cloud represents BLASTN usage per disease context
info

Popular tool citations

chevron_left Gene prediction Amino acid sequence homology search Sequence contamination detection Homology-Based Taxonomic Plasmid detection Nucleotide sequence homology search chevron_right
Want to access the full stats & trends on this tool?

Protocols

BLASTN specifications

Information


Unique identifier OMICS_00990
Name BLASTN
Alternative names Standard Nucleotide BLAST, BLAST, basic local alignment search tool, ncbi blast
Interface Web user interface
Restrictions to use None
Input data Some accession number(s) or sequence(s).
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Subtools


  • discontiguous megablast
  • MegaBLAST
  • RPS-BLAST
  • Rpsblast

Documentation


Maintainers


  • person_outline Eric W Sayers
  • person_outline Alejandro Schaffer

Additional information


https://www.ncbi.nlm.nih.gov/books/NBK279690/

Publications for Standard Nucleotide BLAST

BLASTN citations

 (14052)
call_split

Bat Caliciviruses and Human Noroviruses Are Antigenically Similar and Have Overlapping Histo Blood Group Antigen Binding Profiles

2018
MBio
PMCID: 5964351
DOI: 10.1128/mBio.00869-18
call_split See protocol

[…] rm. De novo contigs were assembled using three programs: Codon Code Aligner, Geneious, and DNAStar. Viral amino acid sequences were created using Vector NTI. Assembled contigs were analyzed using the basic local alignment search tool (BLAST) from the National Center for Biotechnology Information (NCBI) (). BLAST searches were conducted at the amino acid level using the protein-protein BLAST (blast […]

call_split

Viromic Analysis of Wastewater Input to a River Catchment Reveals a Diverse Assemblage of RNA Viruses

2018
mSystems
PMCID: 5964442
DOI: 10.1128/mSystems.00025-18
call_split See protocol

[…] 1 and the options --careful and a minimum coverage of 5 reads per contig (). The contig files of each sample were compared with the contigs of the controls (assembled using the same parameters) using blastn of the BLAST+ suite (). Contigs that showed significant similarity with control contigs were manually removed, creating a curated contig data set. The unmapped read data sets were then mapped a […]

library_books

Identification and tissue distribution of chemosensory protein and odorant binding protein genes in Tropidothorax elegans Distant (Hemiptera: Lygaeidae)

2018
Sci Rep
PMCID: 5958050
PMID: 29773848
DOI: 10.1038/s41598-018-26137-6

[…] Signal peptides were predicted using SignalP 4.1 server (http://www.cbs.dtu.dk/services/SignalP/). The similarity searches were performed using NCBI BLAST (http://blast.ncbi.nlm.nih.gov/). Multiple sequence alignment was conducted using DNAMAN 6.0. Amino acid sequence alignments of the matured OBPs and CSPs from T. elegans and other Hemiptera […]

library_books

Three previously unrecognised classes of biosynthetic enzymes revealed during the production of xenovulene A

2018
Nat Commun
PMCID: 5958101
PMID: 29773797
DOI: 10.1038/s41467-018-04364-9

[…] ies gives results of around 80% ANI. We propose the name Sarocladium schorii for this organism.AntiSMASH analysis suggested the presence of at least 39 secondary metabolite BGC (Supplementary Fig. ). Basic Local Alignment Search Tool (BLAST) searching using the previously identified aspks1 gene rapidly identified a 1.6-Mb scaffold as containing a 49-kb BGC potentially involved in tropolone biosynt […]

library_books

AID/APOBEC like cytidine deaminases are ancient innate immune mediators in invertebrates

2018
Nat Commun
PMCID: 5956068
PMID: 29769532
DOI: 10.1038/s41467-018-04273-x

[…] Sequence comparisons to the sea urchin genome were done using BLAST, BLASTP, or BLASTN at https://blast.ncbi.nlm.nih.gov/Blast.cgi or www.echinobase.org using either standard parameters or with low complexity filter turned off. Multiple sequence alignments were performed using CL […]

library_books

Chitinase genes (CHIAs) provide genomic footprints of a post Cretaceous dietary radiation in placental mammals

2018
Sci Adv
PMCID: 5955627
PMID: 29774238
DOI: 10.1126/sciadv.aar6478

[…] us rotundus) three or more CHIAs in their genomes (tables S1 and S3). These libraries have been deposited into NCBI’s Sequence Read Archive, so we queried them via NCBI’s BLAST interface. We BLASTed (megablast) all five of the assembled T. chinensis CHIA paralogs against a pancreas library (). M. californicus and D. rotundus are phyllostomid chiropterans with no available genome assemblies, so we […]


Want to access the full list of citations?
BLASTN institution(s)
National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA
BLASTN funding source(s)
This research was supported by the Intramural Research Program of the NIH, National Library of Medicine.

BLASTN reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review BLASTN