BLASTP protocols

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BLASTP computational protocol

BLASTP specifications

Information


Unique identifier OMICS_00991
Name BLASTP
Alternative name Standard Protein BLAST
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Subtools


  • DELTA-BLAST
  • PHI-BLAST
  • PSI-BLAST

Maintainer


  • person_outline Stephen Altschul <>

Publications for Standard Protein BLAST

library_books

PSI-BLAST tutorial.

2007 Methods Mol Biol
PMCID: 4781153
PMID: 17993673

BLASTP IN pipelines

 (900)
2018
PMCID: 5765558
PMID: 29319806
DOI: 10.1093/gbe/evx271

[…] 2009). the dissimilarity in terms of protein diversity was analyzed and visualized in a distance tree. therefore, to identify homologous proteins shared between the genomes, an all-against-all blastp was performed, after which orthagogue v1.0.3 (ekseth et al. 2014) and mcl 14-137 (van dongen 2000) were used to identify orthologous groups of proteins (ogps), where the ogps included proteins […]

2018
PMCID: 5769438
PMID: 29335005
DOI: 10.1186/s40168-017-0387-y

[…] 95% and coverage higher than 80% were cataloged as belonging to rescap database (rescapdb). the remaining sequences were translated to proteins. proteins were compared against uniprotkb database by blastp. again, hits with higher identity than 95%, coverage higher than 80% and e value lower than 10−100 were considered as uniprotkb known proteins. the set of remaining proteins […]

2018
PMCID: 5771010
PMID: 29338737
DOI: 10.1186/s12985-018-0926-6

[…] pfam and uniprot databases, using trinotate and blast with a cut-off e-value of 10− 5. 21,259 (38.57%) unigenes were annotated at least in one database, including 6623 in nt, 18,556 in nr, 12,457 in blastp and 17,772 in blastx against uniprot (fig. 2a). on the basis of nr annotation, 15.53% (n = 2882) of unigenes matched to zootermopsis nevadensis, followed by acyrthosiphon pisum: 8.40% (n = 1560 […]

2018
PMCID: 5772385
PMID: 29362695
DOI: 10.7717/peerj.4261

[…] and gene ontology databases. specifically, gene function annotations were based on the protein in the uniprot/swissprot database that had highest homology with the olympia oyster sequence (i.e., top blastp hit). gene targets were selected based on annotations related to gene regulation, immune response, and growth (table 1). corresponding contigs were then selected from the transcriptome using […]

2018
PMCID: 5773217
PMID: 29346417
DOI: 10.1371/journal.ppat.1006765

[…] transporters and also set the stage for studies of an unusual mutant that may help elucidate mechanisms of cryptococcal pathogenesis and host response., uxt1 and uxt2 were identified by blastp searches of known nsts against c. neoformans predicted proteins (broad institute; cryptococcus neoformans var. grubii h99 database); the closest related sequence was that of the aspergillus […]

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