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BlastXtract

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Facilitates early exploration of un-annotated genomic and metagenomic sequences. BlastXtract focuses and uses translated searches from a wider range of commonly used tools. It permits to make rapid functional interpretation and detection of frameshifts prior to manual gene finding and annotation. The tool can be useful for downstream sequence analysis thank to its capability to extract amino acid sequences of any search result.

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BlastXtract versioning

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BlastXtract classification

BlastXtract specifications

Software type:
Package/Module
Restrictions to use:
None
Database management system:
MySQL
Computer skills:
Medium
Stability:
Stable
Source code URL:
https://github.com/ClaessonLab/BlastXtract2
Interface:
Graphical user interface
Programming languages:
Perl
License:
GNU General Public License version 2.0
Version:
2.0
Maintained:
Yes

BlastXtract support

Maintainer

  • Marcus J. Claesson <>

Credits

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Publications

Institution(s)

Microbiology and Systems Biology, TNO, Zeist, Netherlands; Genomics Core Facility, The Netherlands Cancer Institute, Amsterdam, Netherlands; School of microbiology and alimentary pharmabiotic centre, university college cork, cork, Ireland

Funding source(s)

Supported by the Science Foundation Ireland under Grant Number 11/SIRG/B2162.

Link to literature

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