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BlastXtract specifications
Information
| Unique identifier | OMICS_18072 |
|---|---|
| Name | BlastXtract |
| Software type | Package/Module |
| Interface | Graphical user interface |
| Restrictions to use | None |
| Programming languages | Perl |
| Database management system | MySQL |
| License | GNU General Public License version 2.0 |
| Computer skills | Medium |
| Version | 2.0 |
| Stability | Stable |
| Maintained | Yes |
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Versioning
No version available
Maintainer
- person_outline Marcus J. Claesson
Publication for BlastXtract
2015 Bioinformation
PMCID: 4479055
PMID: 26124555
DOI: 10.6026/97320630011173
BlastXtract citation
library_books
Genome sequences and comparative genomics of two Lactobacillus ruminis strains from the bovine and human intestinal tracts
2011
Microb Cell Fact
PMCID: 3231920
PMID: 21995554
DOI: 10.1186/1475-2859-10-S1-S13
[…] Tablet, a next generation sequencing graphical viewer [].Initial automated gene calling was performed using Glimmer 3 [] and Genemark []. Intergenic regions were examined for missed gene calls using BlastXtract []. tRNAs were identified using tRNA-scan [] and ribosomal binding sites using RBSfinder []. Preceding the manual annotation of the L. ruminis ATCC 27782 genome, the protein sequences of e […]
BlastXtract institution(s)
Microbiology and Systems Biology, TNO, Zeist, Netherlands; Genomics Core Facility, The Netherlands Cancer Institute, Amsterdam, Netherlands; School of microbiology and alimentary pharmabiotic centre, university college cork, cork, Ireland
BlastXtract funding source(s)
Supported by the Science Foundation Ireland under Grant Number 11/SIRG/B2162.
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