BlastXtract statistics

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Citations per year

Number of citations per year for the bioinformatics software tool BlastXtract

Tool usage distribution map

This map represents all the scientific publications referring to BlastXtract per scientific context
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Associated diseases


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BlastXtract specifications


Unique identifier OMICS_18072
Name BlastXtract
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Programming languages Perl
Database management system MySQL
License GNU General Public License version 2.0
Computer skills Medium
Version 2.0
Stability Stable
Maintained Yes




No version available


  • person_outline Marcus J. Claesson

Publication for BlastXtract

BlastXtract citation


Genome sequences and comparative genomics of two Lactobacillus ruminis strains from the bovine and human intestinal tracts

Microb Cell Fact
PMCID: 3231920
PMID: 21995554
DOI: 10.1186/1475-2859-10-S1-S13

[…] Tablet, a next generation sequencing graphical viewer [].Initial automated gene calling was performed using Glimmer 3 [] and Genemark []. Intergenic regions were examined for missed gene calls using BlastXtract []. tRNAs were identified using tRNA-scan [] and ribosomal binding sites using RBSfinder []. Preceding the manual annotation of the L. ruminis ATCC 27782 genome, the protein sequences of e […]

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BlastXtract institution(s)
Microbiology and Systems Biology, TNO, Zeist, Netherlands; Genomics Core Facility, The Netherlands Cancer Institute, Amsterdam, Netherlands; School of microbiology and alimentary pharmabiotic centre, university college cork, cork, Ireland
BlastXtract funding source(s)
Supported by the Science Foundation Ireland under Grant Number 11/SIRG/B2162.

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