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BLISS specifications


Unique identifier OMICS_10964
Interface Web user interface
Restrictions to use None
Input data Given two orthologous DNA sequences, BLISS 2.0 is able to output all constrained clusters shared by those two sequences.
Computer skills Basic
Version 2.0
Stability No
Maintained No

Publications for BLISS

BLISS citation


Finding evolutionarily conserved cis regulatory modules with a universal set of motifs

BMC Bioinformatics
PMCID: 2669485
PMID: 19284541
DOI: 10.1186/1471-2105-10-82

[…] erformance of tissue-specific approaches.There are two published methods proposing computational prediction of CRMs based on a non-specific motif set. Though we could not compare our results with the BLISS algorithm [], as it seems to be limited to sequences significantly smaller than 15000 bp. We believe that this is due to the fact, that the computation cost was too high. Actually, the time comp […]

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BLISS institution(s)
Department of Computer and Information Science and Engineering, College of Engineering, UFL, Gainesville, FL, USA; Department of Molecular Genetics and Microbiology & UF Shands Cancer Center, College of Medicine, UFL, Gainesville, FL, USA
BLISS funding source(s)
This work was supported in part by a UF Genetic Institute Seed Grant and by NIH CA095542 and AI067555.

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