Bloocoo specifications

Information


Unique identifier OMICS_04835
Name Bloocoo
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages C++
License GNU Affero General Public License version 3
Computer skills Advanced
Version 1.0.7
Stability Stable
Requirements
CMake, C++ compiler
Maintained Yes

Download


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Versioning


No version available

Maintainers


  • person_outline Guillaume Rizk
  • person_outline Claire Lemaitre

Additional information


https://hal.inria.fr/hal-01092960

Bloocoo citation

library_books

A comparative study of k spectrum based error correction methods for next generation sequencing data analysis

2016
Hum Genomics
PMCID: 4965716
PMID: 27461106
DOI: 10.1186/s40246-016-0068-0

[…] rmed Musket. However, if looking more specifically into simulated datasets, Musket performed equally well as the other three tools did (e.g., the synthetic 40× human chromosome 1 dataset used in []). Bloocoo shares a great deal of similarity with Musket, especially in the multi-stage error correction algorithm [, ]. They reportedly achieved similar correction accuracy as measured by recall and pre […]

Bloocoo institution(s)
Inria/IRISA GenScale, Rennes, France

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