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Blood eQTL browser specifications

Information


Unique identifier OMICS_17656
Name Blood eQTL browser
Interface Web user interface
Restrictions to use None
Input data Gene or SNP name.
Computer skills Basic
Stability Stable
Maintained No

Additional information


Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, Netherlands; Department of Internal Medicine, Erasmus Medical Centre Rotterdam, Netherlands; [etc.]

Publication for Blood eQTL browser

Blood eQTL browser in publications

 (41)
PMCID: 5932181
PMID: 29755505
DOI: 10.3389/fgene.2018.00139

[…] identify mirsnps that might affect expression levels of the reported disease-associated genes, we intersected our results with publicly available eqtl data from the gtex project (lonsdale et al., ), blood eqtl browser (westra et al., ), and the geuvadis project (lappalainen et al., ) (supplementary table )., we found 34 mirsnps that may alter the binding sites of 86 mirnas predicted to target […]

PMCID: 5890276
PMID: 29632299
DOI: 10.1038/s41467-018-03178-z

[…] haploreg (supplementary data ). eqtl analysis was performed by testing each sentinel snp with genes 1mb upstream and downstream using the whole blood tissue data available from gtex portal v6p and blood eqtl browser (supplementary data ). methylation quantitative trait loci (mqtl) for all known bcp-all risk loci where assessed using the mqtl database (www.mqtldb.org), which shows the presence […]

PMCID: 5886383
PMID: 29621232
DOI: 10.1371/journal.pgen.1007275

[…] eqtl databases to identify cis-eqtls at the observed loci: gtex v7 [], the university of chicago eqtl browser [], the islet eqtl explorer (http://theparkerlab.org/tools/isleteqtl/) [], and the blood eqtl browser []. we also searched for cis-eqtls in subcutaneous adipose tissue from the metsim study []. all eqtl data sources used a false discovery rate (fdr) <5% for identifying […]

PMCID: 5834468
PMID: 29500382
DOI: 10.1038/s41467-018-03242-8

[…] which these snps show a significant eqtl association (i.e., allelic variation at the snp affects the expression of that gene). this strategy is based on information from 3 data repositories (gtex, blood eqtl browser, and bios qtl browser), and uses cis-eqtls, which can map snps to genes that lie up to 1 mb apart. we applied a false discovery rate (fdr) of 0.05 to define significant eqtl […]

PMCID: 5904227
PMID: 29460007
DOI: 10.1007/s00401-018-1825-z

[…] the date of diagnosis., we searched for expression quantitative trait loci (eqtls) in 10 brain regions using the v6p gtex [] portal (https://gtexportal.org/home/) as well as in whole blood using the blood eqtl browser [] (https://molgenis58.target.rug.nl/bloodeqtlbrowser/)., we examined for significant contacts between glioma risk snps and nearby genes using the hugin browser [], which is based […]

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