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Blood eQTL browser specifications

Information


Unique identifier OMICS_17656
Name Blood eQTL browser
Interface Web user interface
Restrictions to use None
Input data Gene or SNP name.
Computer skills Basic
Stability Stable
Maintained No

Additional information


Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, Netherlands; Department of Internal Medicine, Erasmus Medical Centre Rotterdam, Netherlands; [etc.]

Publication for Blood eQTL browser

Blood eQTL browser citations

 (41)
library_books

Integrative Analysis Identifies Genetic Variants Associated With Autoimmune Diseases Affecting Putative MicroRNA Binding Sites

2018
PMCID: 5932181
PMID: 29755505
DOI: 10.3389/fgene.2018.00139

[…] identify mirsnps that might affect expression levels of the reported disease-associated genes, we intersected our results with publicly available eqtl data from the gtex project (lonsdale et al., ), blood eqtl browser (westra et al., ), and the geuvadis project (lappalainen et al., ) (supplementary table )., we found 34 mirsnps that may alter the binding sites of 86 mirnas predicted to target […]

library_books

Genome wide association study identifies susceptibility loci for B cell childhood acute lymphoblastic leukemia

2018
PMCID: 5890276
PMID: 29632299
DOI: 10.1038/s41467-018-03178-z

[…] haploreg (supplementary data ). eqtl analysis was performed by testing each sentinel snp with genes 1mb upstream and downstream using the whole blood tissue data available from gtex portal v6p and blood eqtl browser (supplementary data ). methylation quantitative trait loci (mqtl) for all known bcp-all risk loci where assessed using the mqtl database (www.mqtldb.org), which shows the presence […]

library_books

Identification and functional analysis of glycemic trait loci in the China Health and Nutrition Survey

2018
PMCID: 5886383
PMID: 29621232
DOI: 10.1371/journal.pgen.1007275

[…] eqtl databases to identify cis-eqtls at the observed loci: gtex v7 [], the university of chicago eqtl browser [], the islet eqtl explorer (http://theparkerlab.org/tools/isleteqtl/) [], and the blood eqtl browser []. we also searched for cis-eqtls in subcutaneous adipose tissue from the metsim study []. all eqtl data sources used a false discovery rate (fdr) <5% for identifying […]

library_books

Item level analyses reveal genetic heterogeneity in neuroticism

2018
PMCID: 5834468
PMID: 29500382
DOI: 10.1038/s41467-018-03242-8

[…] which these snps show a significant eqtl association (i.e., allelic variation at the snp affects the expression of that gene). this strategy is based on information from 3 data repositories (gtex, blood eqtl browser, and bios qtl browser), and uses cis-eqtls, which can map snps to genes that lie up to 1 mb apart. we applied a false discovery rate (fdr) of 0.05 to define significant eqtl […]

library_books

Diffuse gliomas classified by 1p/19q co deletion, TERT promoter and IDH mutation status are associated with specific genetic risk loci

2018
PMCID: 5904227
PMID: 29460007
DOI: 10.1007/s00401-018-1825-z

[…] the date of diagnosis., we searched for expression quantitative trait loci (eqtls) in 10 brain regions using the v6p gtex [] portal (https://gtexportal.org/home/) as well as in whole blood using the blood eqtl browser [] (https://molgenis58.target.rug.nl/bloodeqtlbrowser/)., we examined for significant contacts between glioma risk snps and nearby genes using the hugin browser [], which is based […]

library_books

Analysis combining correlated glaucoma traits identifies five new risk loci for open angle glaucoma

2018
PMCID: 5814451
PMID: 29449654
DOI: 10.1038/s41598-018-20435-9

[…] adjustment., bioinformatics functional analyses were performed for the novel genome-wide significant loci using haploreg, regulomedb, encode project consortium, and eqtl-browsers including blood eqtl-browser and gtex-browser. the top snp in each locus as well as those with ld r2 > 0.8 with the top snps were used for these analyses., the datasets generated during and/or analysed […]


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