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Associated diseases

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BMix specifications

Information


Unique identifier OMICS_09854
Name BMix
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages MATLAB, R
Computer skills Advanced
Version 0.1
Stability Stable
Requirements
SAMtools, awk, bedtools
Maintained Yes

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Documentation


Maintainer


  • person_outline Niko Beerenwinkel <>

Publication for BMix

BMix in publication

PMCID: 5691074
PMID: 29146908
DOI: 10.1038/s41467-017-01221-z

[…] hg38 with ucsc liftover. trimmed reads were aligned to the numts-masked genome sequence with bowtie v1.12 (–k 1 –n 2 –m 100 –chunkmbs 512 –best –strata). cross-linked regions were identified with bmix, using default parameters (minimum coverage of 5, refinement coverage of 1, a minimum posterior probability of cross-linking of 95% and strand-specific parameter calculation). meme 4.11.2 […]


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BMix institution(s)
Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland; SIB Swiss Institute of Bioinformatics, Basel, Switzerland

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