BML pipeline

BML specifications

Information


Unique identifier OMICS_16120
Name BML
Alternative name Bayesian Mutation Landscape
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements GraphViz
Source code URL http://bml.molgen.mpg.de/data/BMLv1.tar.gz
Maintained Yes

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Maintainer


  • person_outline Navodit Misra <>

Publication for Bayesian Mutation Landscape

BML citation

2018
PMCID: 5820260

[…] gene) and filtered low mutation frequency (<3) genes in order to lessen bias. statistical test in fig. 1b and c were carried out using fisher’s exact test and kruskal-wallis rank sum test., bayesian mutation landscape (bml)14 is a probability network to reconstruct ancestral genotypes and the paths of mutation accumulation. since this method requires more samples than gene mutations, […]

BML institution(s)
Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany; Department of Biosystems Science and Engineering, ETH Zurich and Swiss Institute of Bioinformatics, Basel, Switzerland
BML funding source(s)
This work was supported by the German Cancer Aid (109679).

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