bNets specifications

Information


Unique identifier OMICS_25538
Name bNets
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages MATLAB, R, Shell (Bash)
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Shelli Kesler <>

bNets in publications

 (6)
PMCID: 5694825
PMID: 29187817
DOI: 10.3389/fnhum.2017.00555

[…] with neuroimaging preprocessing., funding. this research was funded by a grant from the national cancer institute (national institutes of health, 1r01ca172145: srk)., 1 https://github.com/srkesler/bnets.git , 2 https://www.dropbox.com/sh/df3akk7wr4wl2uv/aacyvbdznnthxlqt-3oqgjxla?dl=0 , the supplementary material for this article can be found online at: […]

PMCID: 5700833
PMID: 29201992
DOI: 10.1016/j.dadm.2017.10.002

[…] rate , . we ensured that no binarized matrices were disconnected (i.e., had isolated nodes). matrices were then submitted to graph theoretical analysis using brain connectivity toolbox and our bnets toolbox (https://github.com/srkesler/bnets.git) implemented in matlab v2014b (mathworks, inc, natick, ma). connectome metrics were calculated as described previously , . specifically, […]

PMCID: 5523063
PMID: 28504695
DOI: 10.1038/oncsis.2017.30

[…] modifications and methylation of dna, and inhibitors targeting epigenetic mechanisms represent a novel class of anti-cancer drugs. neuroendocrine tumors (nets) of the pancreas (pnets) and bronchus (bnets), which may have 5-year survivals of <50% and as low as 5%, respectively, represent targets for such drugs, as >40% of pnets and ~35% of bnets have mutations of the multiple endocrine […]

PMCID: 5346525
PMID: 28293478
DOI: 10.1002/brb3.643

[…] resulting z‐score connectivity matrices were thresholded to minimum connection density and then submitted to graph theoretical analysis using our brain networks toolbox (https://github.com/srkesler/bnets.git, rrid:scr_014788) as well as brain connectivity toolbox (rubinov & sporns, ) (rrid:scr_004841) implemented in matlab v2014b. we focused on the clustering coefficient considering […]

PMCID: 4744450
PMID: 26852118
DOI: 10.1186/s12936-016-1120-1

[…] of malaria infections (fig. a).table 1 pcr polymerase chain reaction, rcd reactive case detection ap < 0.05 comparing index cases versus reactive case detection participants in the same location bnets mainly untreated (99 %) cage and gender appropriate definition of anaemia (<11 g/dl if < 5 years, <11.5 g/dl if 5–11 years, <12 g/dl if 12–14 years or >15 years and female, […]


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bNets institution(s)
Cognitive Neuroimaging Laboratory, University of Texas, Austin, TX, USA

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