BNFinder specifications

Information


Unique identifier OMICS_19428
Name BNFinder
Alternative name Bayesian Network Finder
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 2.0
Computer skills Advanced
Version 2.1.1
Stability Stable
Source code URL https://files.pythonhosted.org/packages/d3/c9/734e266945a5e708d9fb8a9de61603c548817b380ca96c3c0d1705c2dd55/BNfinder-2.1.1.tar.gz
Maintained Yes

Versioning


No version available

Documentation


Maintainers


  • person_outline Norbert Dojer
  • person_outline Bartek Wilczynski

Publications for Bayesian Network Finder

BNFinder citations

 (2)
library_books

Inferring Broad Regulatory Biology from Time Course Data: Have We Reached an Upper Bound under Constraints Typical of In Vivo Studies?

2015
PLoS One
PMCID: 4435750
PMID: 25984725
DOI: 10.1371/journal.pone.0127364

[…] probability distributions. Dynamic Bayesian networks (DBN) offer further improvements in the analysis of experimental time course data [] and several algorithms have been proposed including BANJO [] BNFINDER [,], GlobalMIT [], and DREM [, ]. While DBNs can infer feedback loops they continue to require data exceeding that of typical in vivo animal studies despite efforts to control computational c […]

library_books

Predicting Spatial and Temporal Gene Expression Using an Integrative Model of Transcription Factor Occupancy and Chromatin State

2012
PLoS Comput Biol
PMCID: 3516547
PMID: 23236268
DOI: 10.1371/journal.pcbi.1002798

[…] The EM algorithm was implemented in Python using the BNfinder library for estimating Bayesian networks, ROC curves were plotted with ROCR package for R. All the scripts are available at https://code.launchpad.net/bnfinder/GEpredict In-situ hybridiza […]

BNFinder institution(s)
Institute of Informatics, University of Warsaw, Warsaw, Poland
BNFinder funding source(s)
Supported by Polish Ministry of Science and Higher Education grant [N N301 065236] and Foundation for Polish Science within Homing Plus programme co-financed by the European Union—European Regional Development Fund.

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