Bodil specifications

Information


Unique identifier OMICS_17133
Name Bodil
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages C++
Computer skills Medium
Stability Beta
Maintained Yes

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Maintainer


  • person_outline Mark Johnson <>

Additional information


Different versions of Bodil are available at http://users.abo.fi/bodil/download.php.

Publication for Bodil

Bodil in publications

 (175)
PMCID: 5953924
PMID: 29765071
DOI: 10.1038/s41598-018-25872-0

[…] offered a plausible template for homology modelling of different gs1l transcripts. next, the sequence alignments of all the transcripts and the crystal structure of hdhd1a were made with malign in bodil modeling environment by employing structure-based matrix (strmat110) with gap formation penalty of 60. based on formed sequence alignment, models of transcripts were built with modeller v9.16., […]

PMCID: 5904979
PMID: 29692886
DOI: 10.1186/s13741-018-0084-9

[…] medicine; acute and chronic pain therapy, universitair ziekenhuis brussel, ponssen, huibert md, albert schweitzer hospital, dordrecht, the netherlands, department: intensive care, rasmussen, bodil steen, professor, md, phd, department of anaesthesia and intensive care medicine, aalborg university hospital, sander, michael, department of anaesthesiology, intensive care medicine and pain […]

PMCID: 5894975
PMID: 29641538
DOI: 10.1371/journal.pone.0194084

[…] outcome and mortality with glucose lowering drug treatment in primary care” (rose) study. a data access request may be made by contacting the uppsala clinical research center (ucr) statistician bodil svennblad, through the ucr website: http://www.ucr.uu.se/en/contact. alternatively, authors may be contacted at [email protected], within-person visit-to-visit variability of blood […]

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Author Index

PMCID: 5888218
DOI: 10.1093/schbul/sby048

[…] nikolaos, s100, s114, s119, s144, s147, s155, s168, s185, s209, s246, s283, s292, s293, s316, s328, s386, kowalchuk, chantel, s104, s313, kozakova, eva, s173, kozauer, susan, s236, s341, kråkvik, bodil, s113, krężołek, martyna, s146, s252, kraguljac, nina, s41, s91, kravitz, richard, s4, krebs, marie-odile, s26, s268, s371, krishnan, ranga, s281, kristensen, jette kolding, s88, kristensen, […]

PMCID: 5879118
PMID: 29632488
DOI: 10.3389/fphar.2018.00260

[…] the docking and rescoring could work better or worse using different structures. the necessary pdb entry editing (figure ) such as the removal of bound ligands from the active sites was done in the bodil molecular modeling environment (lehtonen et al., ). the protein residues were protonated with the default settings in reduce3.24 (word et al., ). the x-ray crystal structure waters were left […]


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Bodil institution(s)
Department of Biochemistry and Pharmacy, Abo Akademi University, Tykistokatu, Turku, Finland; Department of Mathematics, University of Turku, Matematiikan laitos, Turun yliopisto, Finland; CSC, the Finnish IT Center for Science, Espoo, Finland
Bodil funding source(s)
Supported by TEKES – the National Technology Agency of Finland, the Academy of Finland, the Ministry of Education, the Foundation of Abo Akademi University, the Erna and Victor Hasselblad Foundation (Sweden), the Sigfrid Juselius Foundation, the Tor, Joe och Pentti Borgs minnesfund, Fatman Bioinformational Designs Ltd, the National Graduate School in Informational and Structural Biochemistry, Finland, and the Graduate School in Computational Biology, Bioinformatics and Biometry, Finland.

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