BoolNet statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Qualitative modeling chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

BoolNet specifications

Information


Unique identifier OMICS_06963
Name BoolNet
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 2.1.4
Stability Stable
Requirements
XML, igraph(≥0.6)
Maintained Yes

Versioning


Add your version

Documentation


Maintainer


  • person_outline Hans A. Kestler <>

Publication for BoolNet

BoolNet in publications

 (43)
PMCID: 5928136
PMID: 29740342
DOI: 10.3389/fphys.2018.00431

[…] that cause a desired effect on the long-term behavior of the system., there are various tools and frameworks to model, simulate or visualize different types of boolean networks. the r-package boolnet comprises a number of simulation algorithms, for instance, attractor search, network perturbation or robustness analysis for synchronous, asynchronous, and probabilistic boolean networks […]

PMCID: 5875862
PMID: 29596489
DOI: 10.1371/journal.pone.0195126

[…] collecting literature data. modeling of the network functions was performed using visibool []. the exhaustive attractor search simulation to analyze the network was carried out with the r-package boolnet []., to further analyze the effects of igf/wnt crosstalk in our network model, we divided the model in its igf and wnt sub-networks. therefore, we removed the crosstalk elements […]

PMCID: 5841748
PMID: 29513758
DOI: 10.1371/journal.pone.0192949

[…] are already several tools for boolean modeling of regulatory networks in which it is possible to define direct activation-inhibition relationships between the components of the network, such as boolnet r [] or ginsim []. more recently, the r package spiddor (systems pharmacology for efficient drug development on r) among others, has implemented new types of regulatory interactions […]

PMCID: 5824948
PMID: 29476134
DOI: 10.1038/s41598-018-22031-3

[…] previously, several tools have been developed for construction,, visualization, and analyses, of logical networks. from amongst them, the leading tools for computing attractor states include boolnet, the cell collective and cellnetanalyzer. however, these tools fail to associate biologically relevant network states with emergent cell fates. it is the lack of this functionality […]

PMCID: 5823942
PMID: 29472639
DOI: 10.1038/s41598-018-21840-w

[…] the oscillations generated due to impulse of iptg at 24 hour time point at a concentration of 1 mm (fig. ).figure 3, the time series data generated in berkeley madonna was further analyzed in r boolnet package, which shows that the system has two attractor states, i.e. either on or off state. attractor states suggest the stable gene expression pattern of the boolean network. this system […]


To access a full list of publications, you will need to upgrade to our premium service.

BoolNet institution(s)
Institute of Neural Information Processing, University of Ulm and Department of Internal Medicine I, University Hospital Ulm, Ulm, Germany

BoolNet reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review BoolNet