BTR specifications

Unique identifier:
OMICS_18121
Software type:
Package/Module
Restrictions to use:
None
Output format:
A Boolean model in tab-delimited file with each line being an edge; a Boolean model in a space-delimited file with each line being and edge; a Boolean model in comma-delimited file similar in format to the input file format; and a Boolean model simulated with initial state.
Programming languages:
R
Version:
1.2.4
Maintained:
Yes
Name:
BoolTraineR
Interface:
Command line interface
Input data:
A matrix with genes on the columns and cells on the row; a data frame with two columns, targets and update functions; and a single row data frame with genes as the columns.
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable

versioning

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No versioning.

BTR distribution

download

BTR support

Maintainer

  • Berthold Gottgens <>

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Credits

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Publications

Institution(s)

Department of Haematology, Wellcome Trust and MRC Cambridge Stem Cell Institute, Cambridge Institute for Medical Research, University of Cambridge, Cambridge, UK; Department of Computer Science, University of Leicester, Leicester, UK; Biostatistics Unit, Medical Research Council, Cambridge, UK; Microsoft Research Cambridge, Cambridge, UK; Department of Biochemistry, University of Cambridge, Cambridge, UK

Funding source(s)

Supported by Bloodwise, Cancer Research UK, the Biotechnology and Biological Sciences Research Council, NIHR Cambridge Biomedical Research Centre Award, Microsoft Research and core support grants by the Wellcome Trust to the Cambridge Institute for Medical Research and Wellcome Trust - MRC Cambridge Stem Cell Institute.

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