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MicroRNA 499 Expression Distinctively Correlates to Target Genes sox6 and rod1 Profiles to Resolve the Skeletal Muscle Phenotype in Nile Tilapia
[…] says were customized to contain probes and primers designed on exons sites of the investigated genes (highly conserved in fish), which were manually annotated on the Nile tilapia genome (available at Bouillabase.org) with Geneious software. The accession numbers of reference sequences used to recover the genomic sequences of targets on NCBI were XM_001335708 (myh7b), XM_003440147 (rod1), and XM_00 […]
Evolution of cichlid vision via trans regulatory divergence
[…] ion . We used the comparative cichlid genome browser to BLAST the consensus sequence of each marker to the anchored assembly of the Oreochromis niloticus cichlid genome (; assemblies available at Bouillabase.org) in order to infer the orthology of each LG relative to the genetic map of O. niloticus.After linkage mapping, we scanned the cichlid genome for eQTL associated with opsin expression […]
A high resolution map of the Nile tilapia genome: a resource for studying cichlids and other percomorphs
[…] : data S6 and have been submitted to NCBI: accession numbers, ss 244316446–244316740 (SNP markers) and 253831740–253831804 and 75611463–75642120 (EST markers). BAC markers are deposited in http://www.BouillaBase.org. […]
Circular DNA Intermediate in the Duplication of Nile Tilapia vasa Genes
[…] ion numbers of the assembled clones are AB649031-3.Blast searches against the recently released tilapia genome assembly (GenBank accessiong #PRJNA59571) were done using the bioinformatic resources of BouillaBase.org (http://cichlid.umd.edu/blast/blast.html). Alignments of the BAC clones to the genomic sequences were constructed with PipMaker . […]
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