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Protocols specifications


Unique identifier OMICS_21280
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes citations


MicroRNA 499 Expression Distinctively Correlates to Target Genes sox6 and rod1 Profiles to Resolve the Skeletal Muscle Phenotype in Nile Tilapia

PLoS One
PMCID: 4368118
PMID: 25793727
DOI: 10.1371/journal.pone.0119804

[…] says were customized to contain probes and primers designed on exons sites of the investigated genes (highly conserved in fish), which were manually annotated on the Nile tilapia genome (available at with Geneious software. The accession numbers of reference sequences used to recover the genomic sequences of targets on NCBI were XM_001335708 (myh7b), XM_003440147 (rod1), and XM_00 […]


Evolution of cichlid vision via trans regulatory divergence

BMC Evol Biol
PMCID: 3575402
PMID: 23267665
DOI: 10.1186/1471-2148-12-251

[…] ion []. We used the comparative cichlid genome browser to BLAST the consensus sequence of each marker to the anchored assembly of the Oreochromis niloticus cichlid genome ([]; assemblies available at in order to infer the orthology of each LG relative to the genetic map of O. niloticus[].After linkage mapping, we scanned the cichlid genome for eQTL associated with opsin expression […]


A high resolution map of the Nile tilapia genome: a resource for studying cichlids and other percomorphs

BMC Genomics
PMCID: 3441813
PMID: 22672252
DOI: 10.1186/1471-2164-13-222
call_split See protocol

[…] : data S6 and have been submitted to NCBI: accession numbers, ss 244316446–244316740 (SNP markers) and 253831740–253831804 and 75611463–75642120 (EST markers). BAC markers are deposited in […]


Circular DNA Intermediate in the Duplication of Nile Tilapia vasa Genes

PLoS One
PMCID: 3245284
PMID: 22216289
DOI: 10.1371/journal.pone.0029477

[…] ion numbers of the assembled clones are AB649031-3.Blast searches against the recently released tilapia genome assembly (GenBank accessiong #PRJNA59571) were done using the bioinformatic resources of ( Alignments of the BAC clones to the genomic sequences were constructed with PipMaker . […]


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