bovine.db specifications


Unique identifier OMICS_22685
Name bovine.db
Restrictions to use None
Community driven No
Data access File download
User data submission Not allowed
Version 3.2.3
AnnotationDbi, methods, RUnit, annotate, DBI, R(>=2.7.0), AnnotationDbi(>=1.34.3),>=3.3.0)
Maintained Yes


  • Mammals
    • Bos taurus


  • bovine_dbconn
  • bovineACCNUM
  • bovineALIAS2PROBE
  • bovineCHR
  • bovineCHRLENGTHS
  • bovineCHRLOC
  • bovineENSEMBL
  • bovineENTREZID
  • bovineENZYME
  • bovineGENENAME
  • bovineGO
  • bovineMAPCOUNTS
  • bovineORGANISM
  • bovinePATH
  • bovinePFAM
  • bovinePMID
  • bovinePROSITE
  • bovineREFSEQ
  • bovineSYMBOL
  • bovineUNIGENE
  • bovineUNIPROT


bovine.db citation


The application of transcriptomic data in the authentication of beef derived from contrasting production systems

BMC Genomics
PMCID: 5031250
PMID: 27654331
DOI: 10.1186/s12864-016-2851-7

[…] using the puma library []. A Benjamini-Hochberg false discovery rate of 0.05 was used as the cut-off for significance []. Significant probes were annotated using the bioconductor AnnotationDbi [] and bovine.db libraries []. The expression data generated for the current study are MIAME-compliant [] and are deposited in the NCBI Gene Expression Omnibus (GEO) repository [] with experiment series acce […]

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