BPB-PPMS

[…] diphos [], phosphosvm [], scansite, musite [], and ppsp []. acetylation sites were predicted using pail [], aseb [], brabsb-phka [], lysacet [], and lacep []. methylation sites were predicted using bpb-ppms [] and masa []. ubiquitination sites were predicted using bdm-pub [], cksaap ubsite [], and ubpred []. sumoylation sites were predicted using gps-sumo [] and sumoplot […]

[…] intrinsically disordered regions. chen et al. designed the webserver memo, which utilized an orthogonal binary coding scheme to represent sequence fragments. shao et al. developed a predictor called bpb-ppms, which combined bi-profile bayes feature extraction with svm. further, shien et al. proposed masa, which considers both sequence information and structural characteristics […]

[…] []. acetylation sites were predicted using pail [], predmod [], aseb [], plmla [], pskacepred [], brabsb-phka [], lysacet [], and ensemblepail []. methylation sites were predicted using pmes [], bpb-ppms [], plmla [], and cksaap metsite []. sumoylation sites were predicted using sumosp [], sumoplot [], sumohydro [], pci-sumo [], gps-sbm 1.0 [], and elm []. ubiquitination sites were predicted […]

[…] (http://bioinfo3.noble.org/atsubp/?dowhat=atsubp) , and chlorop (http://www.cbs.dtu.dk/services/chlorop/) . we used the following predictors for searching lys and arg methylation sites: memo v2.0 , bpb-ppms (http://www.bioinfo.bio.cuhk.edu.hk/bpbppms/index.jsp) , masa (http://masa.mbc. nctu. edu.tw/index.html) , pmes , and plmla (http://bioinfo.ncu.edu.cn/inquiries _plmla. aspx) ., the 3d […]

[…] yin yang sites with high potential for both modifications., for the prediction of methylation potential at arg and lys residues, we used a combination of three prediction algorithms; memo v2.0 [], bpb-ppms [] and masa []. bpb-ppms is based on bi-profile bayes combined with support vector machines (svms), whereas masa predictions are calculated on the basis of accessible surface area […]