BPP statistics

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Associated diseases

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BPP specifications

Information


Unique identifier OMICS_22180
Name BPP
Alternative name Bacterial Proteogenomic Pipeline
Software type Pipeline/Workflow
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data Some reads in a protein database.
Input format FASTA, TSV, CSV
Output data Some enriched data.
Output format GFF, FASTA
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Martin Eisenacher <>
  • person_outline Julian Uszkoreit <>

Publication for Bacterial Proteogenomic Pipeline

BPP in publication

PMCID: 4925718
PMID: 27446181
DOI: 10.3389/fpls.2016.00955

[…] secretion system can be successfully used for determining plant bacterial interactions (). have successfully used community proteogenomics to identify the unique traits of phyllosphere bacteria. bacterial proteogenomic pipeline and other tools are available for proteogenomic analysis studies (). the technique offers insights into possible strategies adopted for endophytic lifestyle. […]


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BPP institution(s)
Medizinisches Proteom-Center, Ruhr-Universität Bochum, Bochum, Germany; Plant Biochemistry, Ruhr-Universität Bochum, Bochum, Germany
BPP funding source(s)
Supported by PURE (Protein Unit for Research in Europe), a project of North Rhine-Westphalia, Germany, by the European Union Seventh Framework Programme (FP7/2007-2013) under grant agreement number 308518 (CyanoFactory).

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