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BRAD specifications

Information


Unique identifier OMICS_13361
Name BRAD
Alternative name BRAssica Database
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline Xiaowu Wang

Publication for BRAssica Database

BRAD citations

 (41)
library_books

Genome Wide Identification and Analysis of TCP Transcription Factors Involved in the Formation of Leafy Head in Chinese Cabbage

2018
Int J Mol Sci
PMCID: 5877708
PMID: 29538304
DOI: 10.3390/ijms19030847

[…] A conserved TCP domain is usually found at the N terminal of TCP TFs. To obtain the TCP members of Chinese cabbage, the TCP domains (PF03634) of the B. rapa genome were searched on the Brassica Database (BRAD), and all TCP candidate sequences were examined using the domain analysis online tools: PfamScan (https://www.ebi.ac.uk/Tools/pfa/pfamscan/), InterPro (a protein sequence analy […]

library_books

Genome wide identification, phylogeny, evolution, and expression patterns of MtN3/saliva/SWEET genes and functional analysis of BcNS in Brassica rapa

2018
BMC Genomics
PMCID: 5834901
PMID: 29499648
DOI: 10.1186/s12864-018-4554-8

[…] We downloaded the full-length DNA sequences and the cDNA sequences of MtN3/saliva/SWEETs genes from the Brassica database. GSDS (Gene Structure Display Server) (http://gsds.cbi.pku.edu.cn/index.php) was utilized to analyze the locations of introns and exons. Homologous sequence alignment of the 34 MtN3/ […]

library_books

Genome Wide Identification, Evolutionary and Expression Analyses of the GALACTINOL SYNTHASE Gene Family in Rapeseed and Tobacco

2017
Int J Mol Sci
PMCID: 5751367
PMID: 29261107
DOI: 10.3390/ijms18122768

[…] d protein sequences from A. thaliana were downloaded from the Arabidopsis Information Resource (TAIR, http://www.arabidopsis.org), those from B. napus, B. rapa and B. oleracea were retrieved from the Brassica Database (BRAD, http://brassicadb.org/brad), those from N. tabacum, S. lycopersicum and S. tuberosum were downloaded from the Solanaceae Database (https://solgenomics.net) and those from maiz […]

library_books

Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles

2017
BMC Genomics
PMCID: 5683364
PMID: 29132315
DOI: 10.1186/s12864-017-4244-y

[…] ed with the DNAMAN program (version 6.0.3.40; Lynnon Corporation, Quebec, Canada). The BoCNGC protein sequences were also aligned with CNGC sequences from A. thaliana and B. rapa (downloaded from the Brassica database; http://brassicadb.org/brad/) [] using the default settings of the ClustalX 2.0 program. The alignments were viewed with the GeneDoc program []. A phylogenetic tree was constructed u […]

library_books

Genome wide identification and expression analysis of calmodulin like (CML) genes in Chinese cabbage (Brassica rapa L. ssp. pekinensis)

2017
BMC Genomics
PMCID: 5668983
PMID: 29096605
DOI: 10.1186/s12864-017-4240-2

[…] na were downloaded from the TAIR database (The Arabidopsis Information Resource) and used as a query to perform BLASTP searching. The whole genome sequences of Chinese cabbage from the BRAD database (Brassica database) [] and the NCBI database were used to search the potential CML genes in Chinese cabbage. To differentiate between CaM and CML genes which were homologs in Chinese cabbage, we follow […]

library_books

Synteny analysis of genes and distribution of loci controlling oil content and fatty acid profile based on QTL alignment map in Brassica napus

2017
BMC Genomics
PMCID: 5639739
PMID: 29025408
DOI: 10.1186/s12864-017-4176-6

[…] logy.msu.edu/) and TAIR (www.arabidopsis.org) []. Brassica genes were identified based on homology to A. thaliana genes, with a score > 80, by using blastn (using A. thaliana nucleotides sequence) on Brassica Database (http://brassicadb.org/) [] to get B. rapa and B. oleracea homologous genes; and browser (using B. rapa and B. oleracea gene names) on Brassica napus genome resource (http://www.geno […]

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BRAD institution(s)
Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
BRAD funding source(s)
This work was funded by the Chinese Ministry of Science and Technology, National Basic Research Program of China (2006CB101606, 2007CB108803, 2012CB113901, 2012CB113906), the National High Technology R&D Program of China (2006AA100108), and the China International Science and Technology Cooperation Project (2010DFA31730), the National Natural Science Foundation of China (30800753), the European Community financial participation under the Seventh Framework Programme for Research, Technological Development and Demonstration Activities, through the Integrated Project NUE-CROPS FP7-CP-IP 222645.

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