BrainCell specifications

Unique identifier:
OMICS_19253
Interface:
Command line interface
Input data:
A list of character vectors of human ENSEMBL gene ID.
Output format:
pdf, R
Programming languages:
R
Computer skills:
Advanced
Requirements:
Gplots,parallel
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Output data:
Brain heatmaps, Cell taxonomy heatmaps, list of matrices with one matrice for each cell type or phenotype.
Operating system:
Unix/Linux, Mac OS
License:
GNU General Public License version 3.0
Stability:
Stable
Registration required:
No

Subtools

  • BrainH
  • CellTax
  • CellFET
  • DNMFET

versioning

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BrainCell distribution

download

BrainCell support

Maintainers

  • Enrico Petretto <>
  • Andree Delahaye-Duriez <>
  • Michael R. Johnson <>

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Credits

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Publications

Institution(s)

Division of Brain Sciences, Imperial College Faculty of Medicine, London, UK; MRC Clinical Sciences Centre, Imperial College London, London, UK; Université Paris 13, Sorbonne Paris Cité, UFR de Santé, Médecine et Biologie Humaine, Paris, France; PROTECT, INSERM, Université Paris Diderot, Sorbonne
Paris Cité, Paris, France; Duke-NUS Medical School, Singapore, Singapore; Neuroscience TA, UCB Pharma, S.A, Brussels, Belgium; The Florey Institute of Neuroscience and Mental Health, The University of Melbourne, Melbourne, Australia; The Centre for Neural Engineering, The Department of Electrical Engineering, The University of Melbourne, Melbourne, Australia; The Australian Research Council Centre of Excellence for Integrative Brain Function, Melbourne, Australia

Funding source(s)

This study was supported by the European Union’s Seventh Framework Programme (FP7/2007-2013) under grant agreement no. 626229 (iGENEE, FP7/2007-2013, Marie Curie Actions, Intra-European Fellowships for Career Development) and under grant agreement no. 602102, by UK Imperial National Institute for Health Research Biomedical Research Centre, the UK Medical Research Council, UCB Pharma, Duke-National University of Singapore, Medical School and the Singapore Ministry of Health.

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