BrainCell specifications


Unique identifier OMICS_19253
Name BrainCell
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A list of character vectors of human ENSEMBL gene ID.
Output data Brain heatmaps, Cell taxonomy heatmaps, list of matrices with one matrice for each cell type or phenotype.
Output format pdf, R
Operating system Unix/Linux, Mac OS
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements Gplots,parallel
Registration required No
Maintained Yes


  • BrainH
  • CellFET
  • CellTax



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  • person_outline Enrico Petretto <>
  • person_outline Andree Delahaye-Duriez <>
  • person_outline Michael R. Johnson <>

Publication for BrainCell

BrainCell institution(s)
Division of Brain Sciences, Imperial College Faculty of Medicine, London, UK; MRC Clinical Sciences Centre, Imperial College London, London, UK; Université Paris 13, Sorbonne Paris Cité, UFR de Santé, Médecine et Biologie Humaine, Paris, France; PROTECT, INSERM, Université Paris Diderot, Sorbonne Paris Cité, Paris, France; Duke-NUS Medical School, Singapore, Singapore; Neuroscience TA, UCB Pharma, S.A, Brussels, Belgium; The Florey Institute of Neuroscience and Mental Health, The University of Melbourne, Melbourne, Australia; The Centre for Neural Engineering, The Department of Electrical Engineering, The University of Melbourne, Melbourne, Australia; The Australian Research Council Centre of Excellence for Integrative Brain Function, Melbourne, Australia
BrainCell funding source(s)
This study was supported by the European Union’s Seventh Framework Programme (FP7/2007-2013) under grant agreement no. 626229 (iGENEE, FP7/2007-2013, Marie Curie Actions, Intra-European Fellowships for Career Development) and under grant agreement no. 602102, by UK Imperial National Institute for Health Research Biomedical Research Centre, the UK Medical Research Council, UCB Pharma, Duke-National University of Singapore, Medical School and the Singapore Ministry of Health.

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