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Brainstorm specifications

Information


Unique identifier OMICS_15267
Name Brainstorm
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data The anatomy of the subject, the MEG/EEG recordings, the 3D locations of the sensors.
Output data The MEG/EEG recordings time series, topographical mapping on 2D or 3D surfaces, generation of animations and series of snapshots of identical viewpoints at sequential time points, the selection of channels and time segments, the manipulation of clusters of sensors.
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java, MATLAB
License GNU General Public License version 3.0
Computer skills Medium
Stability Stable
Maintained Yes

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  • person_outline François Tadel <>

Publications for Brainstorm

Brainstorm in publications

 (58)
PMCID: 5915520
PMID: 29448077
DOI: 10.1016/j.neuroimage.2018.01.035

[…] for electrophysiological data. these remain to be fully explored., the standard approach to address squid jumps in meg is to discard corrupted data (), and popular toolboxes such as fieldtrip () or brainstorm () offer tools to detect such jumps. discarding is not an option if the steps are dense on a majority of channels (e.g. ). in contrast, the method described here removes the steps […]

PMCID: 5904167
PMID: 29666461
DOI: 10.1038/s41598-018-24566-x

[…] summary of the number of participants and trials included in each analysis., source localization was conducted on averaged frn waveforms separately for each participant and each condition using the brainstorm software package. activations were calculated using the unconstrained sloreta method as implemented in brainstorm, based on electrode locations relative to a standard montreal neurological […]

PMCID: 5882928
PMID: 29615797
DOI: 10.1038/s41598-018-23765-w

[…] corrected for environmental noise using a calibrated linear weighting of 23 reference sensors (manufacturers algorithm, 4d neuroimaging, san diego, ca, usa). further processing was performed using brainstorm software. data were digitally filtered (1–100 hz, 50 hz notch). meg sensors and eeg electrode positions were coregistered to the icbm 152 standard head model and atlas– as individual mri […]

PMCID: 5835533
PMID: 29541024
DOI: 10.3389/fncom.2018.00011

[…] as ct scan with the implanted electrodes (blanke et al., , ). preprocessing and analyses were conducted using cartool software (brunet et al., ; https://sites.google.com/site/cartoolcommunity/), brainstorm toolbox (tadel et al., ; http://neuroimage.usc.edu/brainstorm), fieldtrip toolbox (oostenveld et al., ; http://www.ru.nl/neuroimaging/fieldtrip), and matlab® (mathworks, inc.). epochs […]

PMCID: 5819402
PMID: 29363598
DOI: 10.1073/pnas.1714279115

[…] gradient-echo (mp-rage), 176 slices, field of view = 256, voxel size = 1 × 1 × 1 mm3]. meg data were preprocessed, analyzed, and visualized using datahandler software (wiki.cenir.org/doku.php), the brainstorm toolbox (), and custom matlab scripts. a principal component analysis (pca) was performed through singular-value decomposition function of numerical recipes to correct artifacts (low […]


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Brainstorm institution(s)
Signal & Image Processing Institute, University of Southern California, Los Angeles, CA, USA; MEG Program, Departments of Neurology & Biophysics, Froedtert & Medical College of Wisconsin, Milwaukee, WI, USA; Epilepsy Center, Cleveland Clinic Neurological Institute, Cleveland, OH, USA; MEG Lab, McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
Brainstorm funding source(s)
This work was supported by the National Institutes of Health under Grants nos. R01-EB002010, R01-EB009048, and R01-EB000473, by the Centre National de la Recherche Scientifique (CNRS, France) for the Cognitive Neuroscience and Brain Imaging Laboratory (La Salpêtrière Hospital and Pierre and Marie Curie University, Paris, France), by two grants from the French National Research Agency (ANR) to the Cognitive Neuroscience Unit (Inserm/CEA, Neurospin, France) and to the ViMAGINE project (ANR-08-BLAN-0250), and by the Epilepsy Center in the Cleveland Clinic Neurological Institute.

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