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BrainSuite specifications

Information


Unique identifier OMICS_17567
Name BrainSuite
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages MATLAB
Computer skills Medium
Version 16.1
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Giancarlo D’Andrea <>

Additional information


Tuto: http://brainsuite.org/tutorials/; Wiki: http://forums.brainsuite.org/; A registration is needed to access to tools.

Publications for BrainSuite

BrainSuite citations

 (12)
library_books

Dynamics of Intersubject Brain Networks during Anxious Anticipation

2017
PMCID: 5702479
PMID: 29209184
DOI: 10.3389/fnhum.2017.00552

[…] ), afni (cox, ; http://afni.nimh.nih.gov/), robex (iglesias et al., ; https://www.nitrc.org/projects/robex), fsl (http://fsl.fmrib.ox.ac.uk/fsl/fslwiki), spm (http://www.fil.ion.ucl.ac.uk/spm), and brainsuite (shattuck and leahy, ). we employed a “voting scheme” as follows: based on t1 data, a voxel was considered to be part of the brain if 4/6 packages estimated it to be a brain voxel; […]

library_books

Discrimination of emotional states from scalp and intracranial EEG using multiscale Rényi entropy

2017
PMCID: 5669426
PMID: 29099846
DOI: 10.1371/journal.pone.0186916

[…] covering the occipital cortex. then, we used the patient’s mri scan before implantation to extract the cortex envelopes from the mri scan (inner and outer skull, scalp surface and cortex) using the brainsuite software[]. fiducial points were selected manually. for the forward model, boundary element model (bem) surfaces were created using 15000 dipoles on the entire mri volume so as to include […]

library_books

Electrocorticography of Spatial Shifting and Attentional Selection in Human Superior Parietal Cortex

2017
PMCID: 5425472
PMID: 28553217
DOI: 10.3389/fnhum.2017.00240

[…] on the coregistered postoperative ct. the coregistered ct-mri and the electrode positions were normalized to montreal neurological institute (mni) space using spm8. the mri was segmented using brainsuite 14b (build #1975) (shattuck and leahy, ). electrode positions are visualized in figure using brainstorm (tadel et al., ; http://neuroimage.usc.edu/brainstorm) and the mni coordinates […]

library_books

Bedside functional brain imaging in critically ill children using high density EEG source modeling and multi modal sensory stimulation

2016
PMCID: 4942736
PMID: 27453817
DOI: 10.1016/j.nicl.2016.06.021

[…] patients, as they underwent mri, we also extracted the segmented brain surfaces from their t1-weighted mri images using freesurfer image analysis suite (http://surfer.nmr.mgh.harvard.edu/) or brainsuite () and used them to recalculate the head model and the source imaging. these were then used to compare the source activation results to the ones generated by using a canonical head model. […]

library_books

A large scale comparison of cortical thickness and volume methods for measuring Alzheimer's disease severity

2016
PMCID: 5187496
PMID: 28050342
DOI: 10.1016/j.nicl.2016.05.017

[…] for volume and thickness, several others remain untested, such as gm volumes provided by fsl segmentations () or ants atropos segmentations (), or thicknesses measured by algorithms like civet () or brainsuite (). one could also examine other combinations of segmentation methods input to thickness methods, or methods that include a combination of volume, thickness, and/or other measures […]

library_books

The Heterogeneity in Retrieved Relations between the Personality Trait ‘Harm Avoidance’ and Gray Matter Volumes Due to Variations in the VBM and ROI Labeling Processing Settings

2016
PMCID: 4838261
PMID: 27096608
DOI: 10.1371/journal.pone.0153865

[…] list with the labeled structures is provided in . per subject, the total gmv and the gmv per roi were determined., all statistical analyses were performed in spss separately for the rois obtained in brainsuite and freesurfer., prior to the statistical analyses, all rois were checked for possible roi labeling errors. first of all, all parcellated brains were inspected visually. secondly, […]


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BrainSuite institution(s)
S Andrea Hospital, Institute of Neurosurgery, University of Rome “La Sapienza”, Rome, Italy

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