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chevron_left Structural brain connectivity Morphometric analysis Image visualization Neuroimaging analysis pipeline 3D image analysis Functional brain connectivity Morphometric analysis Image segmentation Image registration Image segmentation Image surfacing Image visualization 3D image analysis Image visualization Image data analysis 3D image analysis Image segmentation Morphometric analysis Data management and annotation 3D image surfacing Image segmentation Image visualization chevron_right
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BrainVISA specifications

Information


Unique identifier OMICS_17568
Name BrainVISA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Programming languages Python
Computer skills Advanced
Version 4.5.0
Stability Stable
Maintained Yes

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Documentation


Additional information


https://pythonneuro.sciencesconf.org/833/document

BrainVISA in publications

 (93)
PMCID: 5884511
PMID: 29617401
DOI: 10.1371/journal.pone.0194422

[…] area) analyzed for each sulcus. we used freesurfer (https://surfer.nmr.mgh.harvard.edu) to classify grey and white matter tissues and morphologist 2013, an image-processing pipeline included in brainvisa (http://brainvisa.info/web/index.html), to quantify the sulcal descriptors. briefly, the morphologist 2013 segmentation pipeline computes a brain mask, imports brain tissues (gray, white […]

PMCID: 5887541
DOI: 10.1093/schbul/sby016.475

[…] with formation representing distinct developmental periods (16, 23, 25, 26 and 28 weeks respectively (chi et al., 1977)) were chosen. sulcal depth was measured using morphologist interface of brainvisa 4.5 (http://brainvisa.info/). following the construction of 3-dimensional models of cortical folds, various sulci were automatically classified using a probabilistic algorithm with maximum […]

PMCID: 5844057
PMID: 29527565
DOI: 10.1523/ENEURO.0197-17.2018

[…] during the acquisitions. to reduce motion, the children passively watched a cartoon on an mri-compatible screen, which also provides a positive experience ()., the mri analysis was performed with brainvisa 4.2 software (rrid:scr_007354; http://brainvisa.info) using the morphologist toolbox (rrid:scr_013248) with standard parameters. an automated pre-processing step was employed to skull-strip […]

PMCID: 5785719
PMID: 29403363
DOI: 10.3389/fnana.2018.00002

[…] dynamics, also remain to be explored. moreover, 3d morphological analyses may be possible in future investigations using available software for 3d shape analysis such as deformetrica, mindboggle, or brainvisa (geffroy et al., ; durrleman et al., ; klein et al., )., the results of this morphological analysis may assist future efforts to reveal more complex morphological characteristics of pcs […]

PMCID: 5744462
PMID: 29311886
DOI: 10.3389/fninf.2017.00073

[…]  = 1.71875 mm × 1.71875 mm × 1.7 mm; rbw = 1502 hz/pixel; echo spacing es = 0.75 ms; partial fourier factor pf = 6/8; grappa = 2; total scan time = 16 min and 46 s)., the data were preprocessed using brainvisa/connectomist-2.0 software (duclap et al., ). they were preliminary corrected for artifacts (eddy currents, susceptibility effects, spikes, and noise), and outliers were also removed. then, t […]


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BrainVISA institution(s)
IFR 49, Gif-sur-Yvette, France; CEA, I2BM, Neurospin, Gif-sur-Yvette, France; CEA, I2BM, MIRCEN, Fontenay-aux-Roses, France

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