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BrainVISA specifications


Unique identifier OMICS_17568
Name BrainVISA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Programming languages Python
Computer skills Advanced
Version 4.5.0
Stability Stable
Maintained Yes


No version available


Additional information

BrainVISA citations


Non invasive Investigation of Human Hippocampal Rhythms Using Magnetoencephalography: A Review

Front Neurosci
PMCID: 5932174
PMID: 29755314
DOI: 10.3389/fnins.2018.00273

[…] ; Murakami and Okada, ). The external envelopes of the hippocampi were manually extracted from individual MRI images, while the neocortex was automatically segmented using Anatomist software ( The MEG gain matrices (MEG forward model) for the hippocampus and neocortex were computed in a spherical head model in accordance with a CTF whole-head 151-channel syst […]


Sulcal Polymorphisms of the IFC and ACC Contribute to Inhibitory Control Variability in Children and Adults

PMCID: 5844057
PMID: 29527565
DOI: 10.1523/ENEURO.0197-17.2018

[…] The MRI analysis was performed with BrainVISA 4.2 software (RRID:SCR_007354; using the Morphologist toolbox (RRID:SCR_013248) with standard parameters. An automated pre-processing step was employed to skull-strip […]


Classification and characterisation of brain network changes in chronic back pain: A multicenter study

Wellcome Open Res
PMCID: 5930551
PMID: 29774244
DOI: 10.21956/wellcomeopenres.15303.r31759
call_split See protocol

[…] To investigate the inter-regional functional relationship among regions over the whole brain, we used the digital BSA-AAL composite atlas composed of 140 ROIs consisting of the BrainVISA Sulci Atlas (BSA) and the Anatomical Automatic Labeling (AAL) package (with a spatial resampling of 2 × 2 × 2 mm 3 grid in MNI space); a band-pass filter with a transmission range from 0.008 […]


A Retrospective 2D Morphometric Analysis of Adult Female Chiari Type I Patients with Commonly Reported and Related Conditions

Front Neuroanat
PMCID: 5785719
PMID: 29403363
DOI: 10.3389/fnana.2018.00002

[…] dynamics, also remain to be explored. Moreover, 3D morphological analyses may be possible in future investigations using available software for 3D shape analysis such as Deformetrica, Mindboggle, or BrainVISA (Geffroy et al., ; Durrleman et al., ; Klein et al., ).The results of this morphological analysis may assist future efforts to reveal more complex morphological characteristics of PCs that c […]


Clustering of Whole Brain White Matter Short Association Bundles Using HARDI Data

Front Neuroinform
PMCID: 5744462
PMID: 29311886
DOI: 10.3389/fninf.2017.00073
call_split See protocol

[…] ze = 1.71875 mm × 1.71875 mm × 1.7 mm; RBW = 1502 Hz/pixel; echo spacing ES = 0.75 ms; partial Fourier factor PF = 6/8; GRAPPA = 2; total scan time = 16 min and 46 s).The data were preprocessed using BrainVISA/Connectomist-2.0 software (Duclap et al., ). They were preliminary corrected for artifacts (eddy currents, susceptibility effects, spikes, and noise), and outliers were also removed. Then, t […]


Longitudinal investigation of neuroinflammation and metabolite profiles in the APP swe×PS1Δe9 transgenic mouse model of Alzheimer's disease

PMCID: 5846890
PMID: 29124761
DOI: 10.1111/jnc.14251

[…] y described (Maroy et al. , ; Boutin et al. ). The correction method combined the geometric transfer matrix method and the regions of interest (ROI)‐opt method. Dynamic PET images were analysed using Brainvisa and Anatomist software ( and quantified using the magnetic resonance imaging (MRI) template (Waxholm space) created by Johnson et al. (). This MRI mouse […]


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BrainVISA institution(s)
IFR 49, Gif-sur-Yvette, France; CEA, I2BM, Neurospin, Gif-sur-Yvette, France; CEA, I2BM, MIRCEN, Fontenay-aux-Roses, France

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