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BrassiBase specifications

Information


Unique identifier OMICS_11778
Name BrassiBase
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Taxon


  • Plants and Fungi
    • Arabidopsis thaliana

Maintainer


  • person_outline Marcus A. Koch

Publication for BrassiBase

BrassiBase citations

 (3)
library_books

Molecular Resources from Transcriptomes in the Brassicaceae Family

2017
Front Plant Sci
PMCID: 5581910
PMID: 28900436
DOI: 10.3389/fpls.2017.01488

[…] ch, ; Hohmann et al., ) and the entire family having undergone a unique polyploid event not shared with other Brassicales families (Barker et al., ; Edger et al., ). Finally, initiatives such as, the BrassiBase knowledge database facilitates and promotes studies targeting the Brassicaceae family by providing publicly available resources (Kiefer et al., ). Despite these major advances and resources […]

library_books

Two cytochromes P450 catalyze S heterocyclizations in cabbage phytoalexin biosynthesis

2015
Nat Chem Biol
PMCID: 4731101
PMID: 26389737
DOI: 10.1038/nchembio.1914

[…] he phylogenetic tree was built using Geneious (v. 7.1) with a neighbor-joining method, no outgroup, and 1,000 bootstrap resamplings (see ). Phylogenetic relationships of crucifer species are based on BrassiBase. […]

library_books

Secondary Structure Analyses of the Nuclear rRNA Internal Transcribed Spacers and Assessment of Its Phylogenetic Utility across the Brassicaceae (Mustards)

2014
PLoS One
PMCID: 4077792
PMID: 24984034
DOI: 10.1371/journal.pone.0101341

[…] er of possible secondary structures, and a description of the lowest energy state structure for every species. All ITS sequences have been verified by taxonomic experts , annotated and deposited into BrassiBase (a comprehensive Brassicaceae database system; http://brassibase.cos.uni-heidelberg.de/) and within a proven phylogenetic context , . The 100 random sequences, with an overall GC content an […]

Citations

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BrassiBase institution(s)
Department of Biodiversity and Plant Systematics, Centre for Organismal Studies (COS) Heidelberg, Heidelberg University, Heidelberg, Germany; CEITEC – Central European Institute of Technology, Masaryk University, Brno, Czech Republic; Missouri Botanical Garden, St. Louis, MO, USA; Heidelberg Botanic Garden, Centre for Organismal Studies (COS) Heidelberg, Heidelberg University, Heidelberg, Germany; Botany Section, Department of Biology/Chemistry, University of Osnabrück, Osnabrück, Germany; Heidelberg Institute for Theoretical Studies (HITS gGmbH), Heidelberg, Germany
BrassiBase funding source(s)
This work was supported by the German Research Foundation (Deutsche Forschungsgemeinschaft, DFG) [grant KO2302-13/1 within the framework of the priority research programme ‘Adaptomics’ (DFG-SSP 1529)].

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