BRB-ArrayTools statistics

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BRB-ArrayTools specifications

Information


Unique identifier OMICS_00750
Name BRB-ArrayTools
Software type Package/Module
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Computer skills Medium
Version 4.6.0
Stability Beta
Maintained Yes

Subtool


  • Gene Set Expression Comparison kit

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Versioning


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Maintainers


  • person_outline Richard Simon <>
  • person_outline BRB-ArrayTools Team <>

Publications for BRB-ArrayTools

BRB-ArrayTools in publications

 (507)
PMCID: 5961875
PMID: 29616846
DOI: 10.1089/acm.2017.0053

[…] statistically significant if their p-value was <0.05. p-values for significance were computed based on 1000 random permutations, at a significance level of each univariate test of 0.05 using brb-arraytools., to determine whether the drop in bp after the rr intervention was linked to specific antihypertensive changes in gene expression and pathophysiologic pathways, transcriptome […]

PMCID: 5885379
PMID: 29618380
DOI: 10.1186/s40425-018-0331-0

[…] spots for further analysis. in preliminary studies, the average intensity values from all initial 20 arrays were normalized simultaneously using an interquartile range transformation performed using brb-arraytools v4.5.0 developed by dr. richard simon and the brb-array tools development team (brb.nci.nih.gov/brb-arraytools). these preliminary arrays are presented in additional file : data file […]

PMCID: 5895709
PMID: 29674952
DOI: 10.3389/fnmol.2018.00103

[…] and integrity and purity was determined by an agilent bioanalyzer and a nano-drop spectrophotometer. transcriptome analysis was performed using brbarraytoolsdeveloped by dr. richard simon and brb-arraytools development team. the data obtained in our microarray experiment were deposited at the geo website under accession number geo: gse111494. microarray data were further analyzed […]

PMCID: 5862949
PMID: 29563500
DOI: 10.1038/s41467-018-03556-7

[…] platforms (u133 v2.0). all data were normalized by using the robust multi-array average method. all patients had undergone cytoreductive surgery and subsequent platinum-based chemotherapy. brb-arraytools were primarily used to analyze statistically gene expression data and all other statistical analyses were performed in the r language environment (http://www.r-project.org). cluster […]

PMCID: 5853093
PMID: 29540180
DOI: 10.1186/s12967-018-1400-3

[…] fold-change = 2(−δδct)., global gene expression analysis was performed according to a standard procedure. raw data was uploaded into madb database (http://madb.nci.nih.gov/) and then imported into brb-arraytools [] (http://linus.nci.nih.gov/brb-arraytools.html). tests for differences between hpgf-c18 and fbs were conducted for individual genes using paired two-sided t tests, considering p […]


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BRB-ArrayTools institution(s)
Biometric Research Branch, National Cancer Institute, Bethesda, MD, USA

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