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  2. Genomics
  3. Genome annotation
  4. Repetitive DNA
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A Perl/C++ package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. BreakDancer sensitively and accurately detected indels ranging from 10 base pairs to 1 megabase pair that are difficult to detect via a single conventional approach.

Software type:
Package
Interface:
Command line interface
Restrictions to use:
None
Input data:
Alignment files
Operating system:
Unix/Linux
Programming languages:
C++, Perl
License:
GNU General Public License version 2.0
Computer skills:
Advanced
Stability:
Stable
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  • (Chen et al., 2009) BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Nature methods.
    PMID: 19668202

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