BreakFusion specifications

Unique identifier:
OMICS_01342
Interface:
Command line interface
Input data:
One or a set of whole transcriptome files that contains mapped paired-end RNA-seq reads.
Output data:
Junctions.
Programming languages:
C++, Perl
Computer skills:
Advanced
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Input format:
BAM
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Stable

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

BreakFusion support

Maintainers

  • Ken Chen <>
  • Li Ding <>

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Department of Bioinformatics and Computational Biology, UT MD Anderson Cancer Center, Houston, TX, USA; The Genome Institute, St Louis, MO, USA; Department of Genetics, Washington University, St Louis, MO, USA; Canada’s Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada; Department of Internal Medicine, Division of Oncology, Washington University, St Louis, MO, USA

Funding source(s)

Supported by The Cancer Center Support Grant from NCI (P30 CA016672); Center for Large-Scale Genome Sequencing and Analysis from NHGRI (U54 HG003079); Structural Genomic Variation analysis for the 1000 Genome project from NHGRI (U01 HG005209).

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

Related Tools