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  3. Genome annotation
  4. Repetitive DNA
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A fast tool for locating sequence breakpoints from the alignment of single end reads (SE) produced by next generation sequencing (NGS).

Software type:
Package
Interface:
Command line interface
Restrictions to use:
None
Operating system:
Unix/Linux
Programming languages:
C++, Perl
Computer skills:
Advanced
Stability:
Stable
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  • (Sun et al., 2012) Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads. Bioinformatics.
    PMID: 22302574
  • (Lin et al., 2014) Making the difference: integrating structural variation detection tools. Briefings in bioinformatics.
    PMID: 25504367

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