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breseq

A computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for microbial sized genomes. breseq reports single-nucleotide mutations, point insertions and deletions, large deletions, and new junctions supported by mosaic reads (such as those produced by new mobile element insertions) in an annotated HTML format.

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breseq classification

breseq specifications

Software type:
Pipeline/Workflow
Restrictions to use:
None
Programming languages:
C++, R
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS
License:
GNU General Public License version 2.0
Stability:
Stable

breseq distribution

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Publications

Institution(s)

Department of Molecular Biosciences, Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, Center for Computational Biology and Bioinformatics, The University of Texas at Austin, Austin, TX, USA

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