BRIG pipeline

BRIG specifications

Information


Unique identifier OMICS_00929
Name BRIG
Alternative name BLAST Ring Image Generator
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Scott A Beatson <>

Publication for BLAST Ring Image Generator

BRIG IN pipelines

 (27)
2018
PMCID: 5864415
PMID: 29577086
DOI: 10.1128/mSystems.00218-17

[…] scaffolded with ragout 1.2 (36) against the v. fischeri es114 reference genome (refseq accession no. gcf_000011805.1). the resulting draft genomes were aligned with the reference genome by using brig 0.95 (37). default parameter settings were used for these programs unless otherwise stated., data from all of the experiments described here have been made publicly available in qiita (qiita […]

2017
PMCID: 5317161
PMID: 28218305
DOI: 10.1038/srep42918

[…] version 20150226 build 1023. c. acnes genome sequences were annotated using the rapid annotation subsystem technology (rast) automated web service24. figure for genome comparison was generated by brig software25 and oat software26., before infection of the bone cell cultures, strains were grown overnight at 37 °c in 40 ml of brain heart infusion (bhi, oxoid, dardilly, france), harvested […]

2017
PMCID: 5367828
PMID: 28346467
DOI: 10.1371/journal.pone.0174429

[…] the circular map of the pa1 genome was generated using cgview (http://wishart.biology.ualberta.ca/cgview/) [25]. comparison of pp3-related cluster sequences was performed using brig (http://brig.sourceforge.net/) [26]., genomic dna was isolated from overnight cultures using the tianamp bacteria dna kit (tiangen, beijing, china) according to the manufacturer’s instructions. […]

2017
PMCID: 5603330
PMID: 28951866
DOI: 10.1155/2017/8724304

[…] (table s2)., to further delineate the differences between nscv1 and nscv2 against all other genomes, the locations and gene content of the unique regions were determined (table s3) and displayed as brig view (figure s2). in the whole genome comparison of nscv1 and nscv2 to v. cholerae strains ms6, n16961, and tsy216, large regions (~10 kb or more) missing in comparator strains are highlighted […]

2017
PMCID: 5603330
PMID: 28951866
DOI: 10.1155/2017/8724304

[…] the whole genome comparison of nscv1 and nscv2 to v. cholerae strains ms6, n16961, and tsy216, large regions (~10 kb or more) missing in comparator strains are highlighted in the outer circle of the brig view (figure s2). as expected, many features (e.g., prophages) that are unique to nscv1 and nscv2 are absent in the pathogenic strains and similarly, many of the known virulence regions (e.g., […]

BRIG institution(s)
Australian Infectious Diseases Research Centre, School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD, Australia

BRIG review

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Fabien Pichon

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Desktop
I tried to used it in command line, and I simply could not... It's seems to work fine with GUI, but this is not very useful for including in a pipeline..